mrzResearchArena / PyFeat
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
☆94Updated 2 years ago
Alternatives and similar repositories for PyFeat:
Users that are interested in PyFeat are comparing it to the libraries listed below
- Protein sequence classification with self-supervised pretraining☆83Updated 3 years ago
- A Python package for extracting protein sequence features☆58Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- A software package for computing features of peptides and proteins☆57Updated 8 months ago
- iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide …☆188Updated 2 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆93Updated 5 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆66Updated 6 months ago
- ☆18Updated 2 years ago
- Draw RNA secondary structures in python.☆46Updated 5 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- ☆30Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆79Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 2 months ago
- ☆51Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆46Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆85Updated 6 months ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 5 years ago
- A repository for neural representational learning of RNA secondary structures☆31Updated 5 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆25Updated 3 years ago
- ☆58Updated 7 years ago
- ☆44Updated 2 months ago
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 6 months ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆72Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated 2 years ago
- ☆16Updated 11 months ago
- Protein language model trained on coding DNA☆46Updated 4 months ago