mims-harvard / pathways
Disease pathways in the human interactome
☆23Updated 7 years ago
Alternatives and similar repositories for pathways:
Users that are interested in pathways are comparing it to the libraries listed below
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Updated 3 years ago
- ☆24Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 6 months ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆29Updated last year
- Target prioritization using network representation learning☆11Updated 3 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆20Updated 6 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 3 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- A project to capture biological pathway data from academic papers☆29Updated 3 weeks ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Biological Network Integration using Convolutions☆62Updated last year
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆20Updated 6 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Updated 3 years ago
- MVP (Qi et al 2021) source code☆15Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- All the fun and adventure of MHC naming, now in Python☆10Updated 2 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated 2 years ago
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆32Updated 2 years ago