Alternatives and similar repositories for ProFET:

Users that are interested in ProFET are comparing it to the libraries listed below

• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated 2 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆59Updated last month
• ddofer / asap
  Amino-Acid Sequence Annotation Predictor (ASAP)
  ☆25Updated 4 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆57Updated 3 years ago
• sameerkhurana10 / DSOL_rv0.2
  deep protein solubility prediction
  ☆36Updated 5 years ago
• duolinwang / CapsNet_PTM
  CapsNet for Protein Post-translational Modification site prediction.
  ☆25Updated 5 years ago
• alexarnimueller / LSTM_peptides
  Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
  ☆73Updated 2 years ago
• kyu999 / biovec
  A new approach for representing biological sequences
  ☆99Updated 7 months ago
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆37Updated 5 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆54Updated 5 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆20Updated 6 years ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆76Updated 9 months ago
• jhmlam / NucleicNet
  ☆35Updated 2 years ago
• largelymfs / deepcontact
  DeepContact Software
  ☆26Updated 6 years ago
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆35Updated 3 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• ehsanasgari / Deep-Proteomics
  ☆51Updated 4 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆53Updated 2 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 4 months ago
• rasbt / protein-science
  A collection of useful tutorials for Protein Science
  ☆107Updated 9 years ago
• samsinai / VAE_protein_function
  Protein function prediction using a variational autoencoder
  ☆93Updated 7 years ago
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 3 years ago
• choderalab / ensembler
  Automated omics-scale protein modeling and simulation setup.
  ☆52Updated 3 years ago
• raghavagps / Pfeature
  A software package for computing features of peptides and proteins
  ☆58Updated 11 months ago