ProFET: Protein Feature Engineering Toolkit for Machine Learning
☆58Sep 14, 2015Updated 10 years ago
Alternatives and similar repositories for ProFET
Users that are interested in ProFET are comparing it to the libraries listed below
Sorting:
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25May 13, 2020Updated 5 years ago
- ☆16Nov 11, 2022Updated 3 years ago
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 14 years ago
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- Protein function prediction using a variational autoencoder☆93Mar 7, 2018Updated 7 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆97Aug 14, 2022Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Aug 2, 2024Updated last year
- A software package for computing features of peptides and proteins☆66Jun 7, 2024Updated last year
- Diving Deep into Sentiment: Understanding Fine-tuned CNNs for Visual Sentiment Prediction☆20Aug 17, 2017Updated 8 years ago
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆85Jul 20, 2022Updated 3 years ago
- Hacking structural biology with Python and pandas☆21Nov 7, 2015Updated 10 years ago
- machine learning, molecular descriptor☆119Apr 10, 2023Updated 2 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Feb 19, 2026Updated last week
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- Evolutionary velocity with protein language models☆97Dec 9, 2025Updated 2 months ago
- This repository is the used for teaching the Physical Chemistry Practicum about Molecular Dynamics (MD) simulations for pharmacy and biol…☆12May 7, 2025Updated 9 months ago
- Machine learning workflows for analyzing high-throughput protein data☆26Nov 22, 2016Updated 9 years ago
- ☆127Feb 16, 2021Updated 5 years ago
- Fast and versatile biomolecular structure PDB file parser using SQL queries☆24Mar 17, 2023Updated 2 years ago
- Ontology for Immune Epitopes☆13Jan 23, 2025Updated last year
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆24Mar 26, 2020Updated 5 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44May 29, 2018Updated 7 years ago
- Python interface to amino acid properties and IEDB☆57Oct 7, 2024Updated last year
- Tools and Libraries for Lexicon-Based Sentiment Analysis☆24Sep 18, 2016Updated 9 years ago
- Interactive Protein Sequence VIsualization/Viewer - Interactive Circos☆11May 5, 2024Updated last year
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆13Jul 16, 2022Updated 3 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Aug 7, 2020Updated 5 years ago
- Implementation of Word Embedding-based Antonym Detection using Thesauri and Distributional Information in NAACL2015☆35Mar 8, 2022Updated 3 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Sep 20, 2021Updated 4 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 4 years ago
- Python implementation of Nussinov RNA folding algorithm and recursive backtrack.☆10Oct 29, 2020Updated 5 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Mar 24, 2021Updated 4 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆13Oct 19, 2022Updated 3 years ago
- GitHub repository for "Leveraging Implicit Knowledge in Neural Networks for Functional Dissection and Engineering of Proteins"☆18Mar 31, 2019Updated 6 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 4 years ago