QData / AttentiveChrome
NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin
☆27Updated 3 years ago
Related projects: ⓘ
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆44Updated 5 years ago
- A deep learning package for predicting TF binding☆41Updated 4 years ago
- ☆23Updated last year
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 3 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 4 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆76Updated 2 weeks ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆32Updated last year
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆28Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 4 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Updated last year
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 4 years ago
- Integrative orthogonal non-negative matrix factorization☆32Updated 4 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 2 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated last year
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 5 years ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆32Updated 3 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆73Updated 2 years ago
- Tools for building and manipulating graphs in Python☆41Updated last year
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆41Updated 11 months ago
- ☆13Updated 4 years ago
- inferring sequence-structure motifs using deep learning☆36Updated last year
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆44Updated 5 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆17Updated 6 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- Final project for CS224d☆9Updated 7 years ago
- Deep Feature Interaction Maps (DFIM)☆52Updated 5 years ago