mstrazar / iONMFLinks
Integrative orthogonal non-negative matrix factorization
☆32Updated 6 years ago
Alternatives and similar repositories for iONMF
Users that are interested in iONMF are comparing it to the libraries listed below
Sorting:
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 5 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 6 years ago
- inferring sequence-structure motifs using deep learning☆40Updated 2 years ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Updated 7 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Updated 3 years ago
- ☆17Updated 5 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 5 years ago
- Towards Gene Expression Convolutions using Gene Interaction Graphs☆75Updated 4 years ago
- OhmNet: Representation learning in multi-layer graphs☆84Updated 5 years ago
- ☆23Updated 2 years ago
- Tools for building and manipulating graphs in Python☆46Updated last month
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 8 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- Deep Learning-based Clustering Approaches for Bioinformatics☆141Updated 4 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆48Updated 5 months ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 7 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Updated 4 years ago
- ☆18Updated last year
- Amino Acid Embedding Representation as Machine Learning Features☆20Updated 7 years ago
- Disease pathways in the human interactome☆23Updated 7 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Updated 5 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆44Updated 2 years ago
- Protein function prediction using a variational autoencoder☆94Updated 7 years ago
- Drug Response Variational Autoencoder☆34Updated 6 years ago
- Deep Network Fusion (deepNF)☆32Updated 5 years ago
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆32Updated 2 years ago
- A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a co…☆74Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago