xypan1232 / iDeepSLinks
inferring sequence-structure motifs using deep learning
☆37Updated last year
Alternatives and similar repositories for iDeepS
Users that are interested in iDeepS are comparing it to the libraries listed below
Sorting:
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆48Updated 10 months ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- Supplementary data for the ACME algorithm☆23Updated 2 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Function prediction using a deep ontology-aware classifier☆83Updated 2 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- ☆23Updated 2 years ago
- ☆55Updated 6 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- DeepContact Software☆26Updated 6 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 6 years ago
- ☆59Updated 7 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 6 years ago
- A convolutional neural network to predict PPI interactions☆42Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆47Updated 5 years ago
- ☆51Updated 4 years ago
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- ☆11Updated 6 years ago
- Protein function prediction using a variational autoencoder☆93Updated 7 years ago
- ☆10Updated 5 years ago