xypan1232 / iDeepS
inferring sequence-structure motifs using deep learning
☆36Updated last year
Related projects ⓘ
Alternatives and complementary repositories for iDeepS
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 5 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆44Updated 5 years ago
- Supplementary data for the ACME algorithm☆22Updated 2 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆87Updated 5 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆47Updated 3 months ago
- A convolutional neural network to predict PPI interactions☆41Updated 6 years ago
- A deep learning package for predicting TF binding☆41Updated 4 years ago
- ☆55Updated 5 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆18Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆36Updated 2 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆48Updated 5 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 5 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆20Updated 2 years ago
- ☆23Updated last year
- ☆56Updated 7 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆44Updated 5 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 3 years ago
- Function prediction using a deep ontology-aware classifier☆80Updated 2 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆120Updated 6 years ago
- Protein function prediction using a variational autoencoder☆92Updated 6 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 4 years ago
- Training and testing of DeepBind models.☆92Updated 9 years ago
- ☆51Updated 4 years ago