inferring sequence-structure motifs using deep learning
☆40Aug 3, 2023Updated 2 years ago
Alternatives and similar repositories for iDeepS
Users that are interested in iDeepS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago
- Explicit Decomposition with Neighborhoods python version☆45Jun 17, 2024Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- inferring RBP binding sites and motifs using local and global CNNs☆19Sep 29, 2019Updated 6 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 7 years ago
- ☆15Sep 14, 2021Updated 4 years ago
- Integrative orthogonal non-negative matrix factorization☆32Sep 29, 2019Updated 6 years ago
- ☆16Jan 5, 2021Updated 5 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 6 months ago
- ☆13Feb 20, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scripts associated with NAFLD-NASH project☆28May 23, 2024Updated last year
- ☆16Mar 3, 2018Updated 8 years ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- CapsNet for Protein Post-translational Modification site prediction.☆25Nov 20, 2019Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Apr 4, 2018Updated 8 years ago
- ☆14May 26, 2020Updated 5 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- An attempted survey of the current state of Computational Phenotyping, i.e. the use of deep learning for extracting insight from large El…☆22Aug 20, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆20Dec 30, 2021Updated 4 years ago
- Machine learning on electronic health records☆11Jan 29, 2018Updated 8 years ago
- ☆29Nov 6, 2022Updated 3 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- This repo is based on https://github.com/yunjey/pytorch-tutorial, but add jupyter notebooks and detailed explanation of PyTorch APIs☆24Nov 7, 2018Updated 7 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Dec 8, 2025Updated 4 months ago
- Analysis of (gut) microbiome in Qiime2 and R.☆25Aug 23, 2024Updated last year
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Apr 16, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- For training very deep networks☆10Jun 12, 2017Updated 8 years ago
- ☆16Mar 3, 2023Updated 3 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 9 months ago
- ☆19Aug 29, 2025Updated 7 months ago
- The holdout randomization test: feature selection using black box predictive models☆22Mar 19, 2021Updated 5 years ago
- Predicts if Protein will reside in the protein corona on the surface of engineered nanomaterials☆12Jun 21, 2022Updated 3 years ago
- This project introduces a novel single-step retrosynthesis approach based on chemical compound substructures and fingerprint descriptors.☆19Mar 31, 2021Updated 5 years ago