xypan1232 / iDeepS
inferring sequence-structure motifs using deep learning
☆37Updated last year
Alternatives and similar repositories for iDeepS:
Users that are interested in iDeepS are comparing it to the libraries listed below
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- ☆55Updated 5 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆48Updated 5 months ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 5 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 5 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 5 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆49Updated 5 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆16Updated 2 years ago
- A deep learning package for predicting TF binding☆42Updated 4 years ago
- ☆23Updated last year
- Supplementary data for the ACME algorithm☆23Updated 2 years ago
- A convolutional neural network to predict PPI interactions☆41Updated 6 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆87Updated 5 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆43Updated 5 months ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 5 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆19Updated 6 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆16Updated 6 months ago
- ☆58Updated 7 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆20Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 5 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆47Updated 3 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago