xypan1232 / iDeepSView external linksLinks
inferring sequence-structure motifs using deep learning
☆40Aug 3, 2023Updated 2 years ago
Alternatives and similar repositories for iDeepS
Users that are interested in iDeepS are comparing it to the libraries listed below
Sorting:
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago
- inferring RBP binding sites and motifs using local and global CNNs☆19Sep 29, 2019Updated 6 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Feb 6, 2019Updated 7 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆13Aug 2, 2022Updated 3 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Nov 20, 2019Updated 6 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated last year
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- ☆15Sep 14, 2021Updated 4 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 6 years ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated 11 months ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Jul 25, 2022Updated 3 years ago
- Python Matrix Factorization Module☆14Mar 13, 2017Updated 8 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 3 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- ☆14May 26, 2020Updated 5 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- Critical Assessment of Intrinsic Disorder☆14Aug 11, 2025Updated 6 months ago
- Python code for "Fast Bayesian nonnegative matrix factorisation and tri-factorisation", presented at NIPS 2016 Workshop on Advances in Ap…☆20Jun 10, 2018Updated 7 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- A client for the Ensembl REST API written in the Python programming language☆28Dec 8, 2025Updated 2 months ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Apr 4, 2018Updated 7 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 6 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- ☆16Jan 5, 2021Updated 5 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆19Dec 30, 2021Updated 4 years ago
- DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG☆69Apr 16, 2018Updated 7 years ago
- Integrative orthogonal non-negative matrix factorization☆32Sep 29, 2019Updated 6 years ago
- Analysis of (gut) microbiome in Qiime2 and R.☆23Aug 23, 2024Updated last year
- Extensions to Edebug☆27Sep 21, 2019Updated 6 years ago
- RWA recurrent neural networks☆17Apr 14, 2017Updated 8 years ago
- Denoising Autoencoders for Phenotype Stratification☆42Nov 9, 2018Updated 7 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 8 years ago