cschin / DCNet
DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
☆69Updated 6 years ago
Alternatives and similar repositories for DCNet:
Users that are interested in DCNet are comparing it to the libraries listed below
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 5 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆41Updated 8 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 5 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- Understanding sequence conservation with deep learning☆19Updated 7 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆28Updated 7 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Updated 7 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆23Updated 5 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 4 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated last year
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- ☆23Updated 3 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- LSTM for binary DNA sequence classification☆31Updated 2 years ago
- ☆10Updated 4 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 5 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals☆19Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 9 months ago