Alternatives and similar repositories for rnaseq_workflow

Users that are interested in rnaseq_workflow are comparing it to the libraries listed below

• deWitLab / peakC
  Peak calling for 4C data
  ☆13Updated 7 years ago
• nasqar / deseq2shiny
  a web-based R shiny application that wraps DESeq2 R package
  ☆13Updated 5 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆37Updated last year
• maxsonBraunLab / gopeaks
  Peak caller for CUT&TAG data
  ☆29Updated 3 years ago
• powellgenomicslab / BGI_vs_Illumina_Benchmark
  This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…
  ☆18Updated 4 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 3 years ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆32Updated 3 years ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated last year
• UCSF-DSOS / bulk_RNA_seq
  RNA seq analysis using Bioconductor (analysis built on limma, edgeR)
  ☆12Updated 3 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆60Updated 11 months ago
• CostaLab / scrna_seurat_pipeline
  comprehensive analysis of single-cell transcriptomics data
  ☆25Updated 8 months ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆34Updated 3 years ago
• YosefLab / ImpulseDE2
  ☆41Updated 3 years ago
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆16Updated 5 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆34Updated 7 years ago
• shahcompbio / single_cell_pipeline
  Single Cell Analysis Automated Workflow
  ☆28Updated 2 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 3 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated last month
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 3 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• yupenghe / encode_dna_dynamics
  Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
  ☆11Updated 5 years ago
• Core-Bioinformatics / bulkAnalyseR
  ☆29Updated 2 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆17Updated 5 years ago
• mbassalbioinformatics / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆22Updated last year
• MengjunWu / TCseq
  An R package for time course sequencing data analysis
  ☆20Updated 2 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• kdkorthauer / cfMeDIPseq-RCC
  Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"
  ☆12Updated 5 years ago