jrderuiter / snakemake-rnaseqLinks
RNA-seq workflow for Snakemake based on STAR and featureCounts.
☆21Updated 6 years ago
Alternatives and similar repositories for snakemake-rnaseq
Users that are interested in snakemake-rnaseq are comparing it to the libraries listed below
Sorting:
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- ☆50Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 3 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- ☆15Updated 2 years ago
- ☆29Updated 5 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 3 years ago
- Tools for analyzing DNA methylation data☆43Updated last week
- ☆70Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Updated 2 weeks ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 weeks ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆71Updated 4 months ago
- An interactive web-tool for RNA-seq analysis☆68Updated 5 months ago