Alternatives and similar repositories for STAGATE

Users that are interested in STAGATE are comparing it to the libraries listed below

• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆73Updated 3 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆57Updated last year
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆63Updated 2 years ago
• JinmiaoChenLab / GraphST
  ☆126Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆41Updated last year
• QuKunLab / SPACEL
  ☆59Updated last year
• JinmiaoChenLab / SEDR
  ☆60Updated 8 months ago
• zhaofangyuan98 / SDMBench
  ☆41Updated last year
• JiangBioLab / DeepST
  Identify spatial domain
  ☆79Updated 2 months ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 5 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• hongleir / SpaceFlow
  ☆30Updated 2 years ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆87Updated 7 months ago
• QuKunLab / SpatialBenchmarking
  ☆121Updated 3 years ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated 9 months ago
• dchary / ucdeconvolve_paper
  UniCell Deconvolve Paper
  ☆10Updated 2 years ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 3 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆66Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆88Updated 5 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆87Updated last month
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆71Updated 6 months ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated 10 months ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• zcang / SpaOTsc
  ☆45Updated last week
• SydneyBioX / scJoint
  ☆60Updated 2 years ago
• Spencerfar / LatentVelo
  ☆24Updated last year
• XLearning-SCU / scBridge
  ☆21Updated 11 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆31Updated 2 years ago