Alternatives and similar repositories for STAGATE

Users that are interested in STAGATE are comparing it to the libraries listed below

• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆76Updated 3 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆46Updated last year
• JinmiaoChenLab / GraphST
  ☆135Updated last year
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆61Updated last year
• QuKunLab / SPACEL
  ☆60Updated last year
• JinmiaoChenLab / SEDR
  ☆63Updated 11 months ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆63Updated 2 years ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆85Updated 4 months ago
• hongleir / SpaceFlow
  ☆30Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆38Updated last year
• zhaofangyuan98 / SDMBench
  ☆41Updated last year
• QuKunLab / SpatialBenchmarking
  ☆123Updated 3 years ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆88Updated 10 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated last year
• dchary / ucdeconvolve_paper
  UniCell Deconvolve Paper
  ☆10Updated 2 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 8 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆71Updated last year
• Spencerfar / LatentVelo
  ☆26Updated 2 years ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 5 months ago
• sldyns / SpaHDmap
  Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping
  ☆11Updated last month
• zhanglab-wbgcas / STGRNS
  ☆30Updated 2 years ago
• XLearning-SCU / scBridge
  ☆21Updated last year
• uhlerlab / STACI
  ☆14Updated 2 years ago
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆96Updated 8 months ago
• prabhakarlab / Banksy_py
  ☆64Updated last week
• zhanglabtools / STAligner
  STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages
  ☆24Updated last year
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated last year
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆85Updated last year