ENCODE-DCC / encode-data-usage-examplesLinks
☆10Updated last month
Alternatives and similar repositories for encode-data-usage-examples
Users that are interested in encode-data-usage-examples are comparing it to the libraries listed below
Sorting:
- ☆54Updated this week
- ☆76Updated 2 weeks ago
- ☆41Updated this week
- ☆18Updated 10 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated this week
- Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data e…☆43Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- DRUGZ software☆24Updated 4 years ago
- ☆49Updated 3 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Updated 6 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 3 months ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Microbial analysis in TCGA data☆91Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆86Updated last month
- Python interface to running command-line and web-based MHC binding predictors☆98Updated last year
- coding exercise using TCGA immune infiltration data☆46Updated last year
- Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning☆64Updated 2 months ago
- ☆28Updated 4 years ago
- some resources for startup companies☆56Updated last year
- ☆10Updated 3 years ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆140Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆16Updated 2 weeks ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- A DIY guide to gene ontology, pathway, and gene set enrichment analysis☆26Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago