ENCODE-DCC / encode-data-usage-examples
☆10Updated 5 years ago
Alternatives and similar repositories for encode-data-usage-examples:
Users that are interested in encode-data-usage-examples are comparing it to the libraries listed below
- ☆23Updated 8 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- ☆47Updated 2 years ago
- ☆46Updated 7 months ago
- ☆37Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- ☆80Updated 5 months ago
- ☆38Updated 2 months ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- microRNA profiling pipeline☆77Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- ☆18Updated 9 years ago
- coding exercise using TCGA immune infiltration data☆45Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆83Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆128Updated 8 months ago
- Microbial analysis in TCGA data☆90Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last week
- Differential gene expression analysis on RNA-seq data☆11Updated last year
- Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning☆57Updated last month
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆70Updated 3 weeks ago
- ☆10Updated 4 years ago
- A Python package for pharmacogenomics (PGx) research☆73Updated 2 months ago
- A continually expanding collection of RNA-seq tools☆48Updated 6 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- ☆49Updated 4 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ☆64Updated last year