Alternatives and similar repositories for GeneNet-:

Users that are interested in GeneNet- are comparing it to the libraries listed below

• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆45Updated 5 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆37Updated 4 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• ntranoslab / esm-variants
  ☆73Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆56Updated 3 weeks ago
• kundajelab / DART-Eval
  ☆33Updated last week
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆44Updated 5 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆74Updated last year
• enijkamp / progen2
  Official release of the ProGen models
  ☆30Updated 2 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 8 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆35Updated 6 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆96Updated 6 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆46Updated 2 weeks ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆17Updated 9 months ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆49Updated last month
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆102Updated 2 years ago
• VariantEffect / mavedb-api
  MaveDB API
  ☆13Updated 2 weeks ago
• bm2-lab / DeepCRISPR
  ☆60Updated 2 years ago
• HaochenW / Deep_promoter
  The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"
  ☆26Updated 5 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• louzounlab / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 4 years ago
• TattaBio / gLM2
  ☆63Updated 6 months ago
• lrsoenksen / CL_RNA_SynthBio
  Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology
  ☆14Updated last year
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆36Updated 6 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago