SPACE: STRING proteins as complementary embeddings
☆40Apr 10, 2026Updated 2 months ago
Alternatives and similar repositories for SPACE
Users that are interested in SPACE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 8 months ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆61May 19, 2025Updated last year
- PathIntegrate Python package for pathway-based multi-omics data integration☆19Nov 9, 2024Updated last year
- Learning disentangled representations of single-cell data for high-quality generation☆16Mar 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Nov 12, 2025Updated 6 months ago
- ☆21Feb 19, 2025Updated last year
- Gene expression time-series extrapolation for heterogeneous data☆20Apr 29, 2023Updated 3 years ago
- ☆21Jun 5, 2017Updated 9 years ago
- Functional Associations using Variational Autoencoders☆42May 25, 2026Updated 2 weeks ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20May 25, 2026Updated 2 weeks ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 6 months ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Predicting ncRNA-protein interaction using high-level features based on deep learning☆15May 2, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆29Feb 23, 2026Updated 3 months ago
- ☆15Apr 3, 2025Updated last year
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 3 weeks ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated 2 weeks ago
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 8 months ago
- BoostDiff - Inference of differential networks from gene expression data☆13Jan 11, 2024Updated 2 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆72Apr 10, 2023Updated 3 years ago
- Tissue reassembly with generative AI☆32May 22, 2025Updated last year
- ☆10Nov 29, 2022Updated 3 years ago
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated last month
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated 2 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13May 20, 2026Updated 3 weeks ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 7 years ago
- ☆40Jul 3, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 9 months ago
- Decoding the functional networks of non-model organisms☆12May 10, 2026Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆14Jan 27, 2023Updated 3 years ago
- ☆11Mar 8, 2026Updated 3 months ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Creating package to draw proteins from Uniprot API☆35Feb 2, 2026Updated 4 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year