TGAC / NanoOK
Analysis tool for Nanopore sequencing data
☆33Updated 5 years ago
Alternatives and similar repositories for NanoOK:
Users that are interested in NanoOK are comparing it to the libraries listed below
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆6Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- ☆79Updated 8 months ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Edinburgh Genomics MinION training 2016☆34Updated 8 years ago
- finshingTool☆54Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago