TGAC / NanoOK
Analysis tool for Nanopore sequencing data
☆33Updated 6 years ago
Alternatives and similar repositories for NanoOK:
Users that are interested in NanoOK are comparing it to the libraries listed below
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Code for nanopore paper☆33Updated 9 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- ☆17Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆26Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Visualize whole genome alignments as linear maps☆72Updated 7 months ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago