Alternatives and similar repositories for smk-simple-slurm:

Users that are interested in smk-simple-slurm are comparing it to the libraries listed below

• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆131Updated 11 months ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆95Updated last year
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆221Updated this week
• deto / Snakemake_Tutorial
  A short tutorial on getting started with Snakemake for workflow management
  ☆51Updated 6 years ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆164Updated 3 weeks ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆58Updated 3 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆120Updated 3 weeks ago
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆65Updated last month
• snakemake-workflows / docs
  Documentation of the Snakemake-Workflows project
  ☆153Updated 3 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆72Updated 11 months ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 4 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 4 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆98Updated this week
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆164Updated 4 months ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆156Updated last year
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆123Updated 2 years ago
• fastqe / fastqe
  FASTQ sequence quality visualisation with Emoji
  ☆171Updated 5 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆74Updated 2 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆126Updated last year
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆339Updated 8 months ago
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆99Updated 2 months ago
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆110Updated 5 months ago
• quinlan-lab / sllobs-biostats
  ☆70Updated 3 years ago
• Ensembl / WiggleTools
  Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
  ☆147Updated 5 months ago
• sbslee / fuc
  Frequently used commands in bioinformatics
  ☆55Updated 6 months ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 4 months ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆73Updated 8 months ago