A simple Snakemake profile for Slurm without --cluster-config
☆166Jun 20, 2024Updated last year
Alternatives and similar repositories for smk-simple-slurm
Users that are interested in smk-simple-slurm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cookiecutter for snakemake slurm profile☆135Apr 25, 2024Updated 2 years ago
- The uncompromising Snakemake code formatter☆193Updated this week
- A Github action for running a Snakemake workflow☆62Apr 24, 2026Updated last month
- deploy a snakemake pipeline directly from version control (under development)☆25Jun 1, 2026Updated last week
- Committee Meeting Reports - LaTeX☆11Jun 11, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Misc. utilities☆11May 21, 2019Updated 7 years ago
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- A short tutorial on getting started with Snakemake for workflow management☆57Apr 1, 2019Updated 7 years ago
- This is the development home of the workflow management system Snakemake. For general information, see☆2,806Jun 3, 2026Updated last week
- ☆13Jan 8, 2020Updated 6 years ago
- This is the development home of the Snakemake wrapper repository, see☆245Updated this week
- reproducible research project template for R using Renv and snakemake with an econ application☆64Apr 19, 2022Updated 4 years ago
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12May 12, 2026Updated 3 weeks ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆20Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- An awesome tool to visualize snakemake rule graphs☆36May 2, 2026Updated last month
- ☆23May 26, 2021Updated 5 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆90Jun 1, 2026Updated last week
- ☆30Oct 14, 2022Updated 3 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Increasingly complete example bioinformatics workflow☆18Oct 19, 2022Updated 3 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- Just the leafviz parts of Leafcutter☆15Apr 2, 2026Updated 2 months ago
- ☆17Jan 6, 2025Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆406Jun 3, 2026Updated last week
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- A template repository for snakemake workflows.☆43Mar 16, 2026Updated 2 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA-seq workflow using STAR and DESeq2☆364Dec 18, 2025Updated 5 months ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Jun 1, 2026Updated last week
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- Toolkit to convert the output of common variant calling programs to VCF☆23Dec 7, 2022Updated 3 years ago
- Monitor computational workflows in real time☆73May 27, 2026Updated last week
- Randomly subsample sequencing reads or alignments☆267Updated this week