jdblischak / smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
☆152Updated 9 months ago
Alternatives and similar repositories for smk-simple-slurm:
Users that are interested in smk-simple-slurm are comparing it to the libraries listed below
- A template for standard compliant snakemake-workflows☆92Updated last year
- Cookiecutter for snakemake slurm profile☆130Updated 10 months ago
- The uncompromising Snakemake code formatter☆159Updated this week
- NBIS/Elixir course: Tools for Reproducible Research☆64Updated 2 weeks ago
- A short tutorial on getting started with Snakemake for workflow management☆51Updated 5 years ago
- This is the development home of the Snakemake wrapper repository, see☆218Updated this week
- Documentation of the Snakemake-Workflows project☆153Updated 3 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 3 weeks ago
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Example Nextflow pipelines and programming techniques☆105Updated 3 months ago
- Download FASTQ files from SRA or ENA repositories.☆309Updated 5 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆147Updated 4 months ago
- machine-readable file format for genomic library sequence and structure☆119Updated last month
- Module for embedding igv.js in an IPython notebook☆74Updated last month
- A cookiecutter template for Snakemake workflows☆57Updated 3 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆96Updated this week
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆105Updated 4 years ago
- FASTQ sequence quality visualisation with Emoji☆171Updated 4 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 3 months ago
- Simple test framework for Nextflow pipelines☆156Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- ☆70Updated 3 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆115Updated last year
- Merging paired-end reads and removing adapters☆44Updated last week
- Learning the Sequence Alignment/Map format☆112Updated 11 months ago
- Detecting sites of genomic enrichment☆190Updated last year
- Match up paired end fastq files quickly and efficiently.☆145Updated 9 months ago
- Tools for plotting methylation data in various ways☆141Updated last week