jdblischak / smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
☆154Updated 10 months ago
Alternatives and similar repositories for smk-simple-slurm
Users that are interested in smk-simple-slurm are comparing it to the libraries listed below
Sorting:
- A template for standard compliant snakemake-workflows☆96Updated last week
- Cookiecutter for snakemake slurm profile☆132Updated last year
- A short tutorial on getting started with Snakemake for workflow management☆51Updated 6 years ago
- This is the development home of the Snakemake wrapper repository, see☆225Updated this week
- The uncompromising Snakemake code formatter☆165Updated last month
- NBIS/Elixir course: Tools for Reproducible Research☆65Updated 3 weeks ago
- Documentation of the Snakemake-Workflows project☆154Updated 3 years ago
- Monitor computational workflows in real time☆73Updated 11 months ago
- Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…☆156Updated last year
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆99Updated this week
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆111Updated 5 months ago
- Publication quality NGS track plotting☆112Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆323Updated last month
- Simple test framework for Nextflow pipelines☆160Updated 4 months ago
- machine-readable file format for genomic library sequence and structure☆120Updated last month
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆119Updated last year
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated 2 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 6 months ago
- Module for embedding igv.js in an IPython notebook☆74Updated 3 months ago
- RNA-seq workflow using STAR and DESeq2☆339Updated 9 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆164Updated 5 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆105Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- ☆70Updated 3 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆148Updated 6 months ago