A bioinformatic toolkit to align genome assemblies into pangenome graphs
☆127Jun 4, 2026Updated last week
Alternatives and similar repositories for pangraph
Users that are interested in pangraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated last year
- A toolkit for exploring regions of variation in pangenomes☆14May 19, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated last month
- ☆11Dec 9, 2022Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72May 23, 2026Updated 2 weeks ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated last month
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated 3 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆142Updated this week
- Graph-based assembly phasing☆95Nov 25, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Build a partitioned pangenome graph from microbial genomes☆303Jun 3, 2026Updated last week
- ☆45Apr 18, 2026Updated last month
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- An updated pipeline for pangenome investigation☆361Jun 2, 2026Updated last week
- Precise host read removal☆124Apr 13, 2026Updated last month
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆55Mar 13, 2025Updated last year
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- the pangenome graph builder☆501Mar 31, 2026Updated 2 months ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 10 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Mar 7, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆231Apr 27, 2026Updated last month
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆81May 6, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆307Feb 3, 2026Updated 4 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆62Sep 15, 2025Updated 8 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 5, 2026Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆66Jan 19, 2026Updated 4 months ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆252Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- Bacterial GWAS analysis☆56May 21, 2026Updated 3 weeks ago