Automatically exported from code.google.com/p/ea-utils
☆97Jun 8, 2023Updated 3 years ago
Alternatives and similar repositories for ea-utils
Users that are interested in ea-utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- Demultiplexes a fastq.☆47Dec 21, 2020Updated 5 years ago
- Match up paired end fastq files quickly and efficiently.☆156Jun 2, 2024Updated 2 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆155May 31, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Statistical Analysis of Metagenomic Profiles☆93Sep 21, 2026Updated last month
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,082Jul 31, 2026Updated 3 months ago
- An efficient FASTQ manipulation suite☆139Jan 27, 2020Updated 6 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆214May 14, 2020Updated 6 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 9 months ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- ☆98Sep 21, 2022Updated 4 years ago
- The MARVEL assembler☆80Jul 7, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆64Apr 12, 2021Updated 5 years ago
- Python3 scripts to manipulate FASTA and FASTQ files☆73Mar 24, 2025Updated last year
- Windowed Adaptive Trimming for fastq files using quality☆229May 8, 2017Updated 9 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆880Sep 3, 2026Updated 2 months ago
- ☆13May 27, 2025Updated last year
- For anyone who wants to share and compare their microbiome data.☆28Jun 17, 2016Updated 10 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆12Sep 15, 2026Updated last month
- Processing support for Greengenes2☆15Jul 31, 2023Updated 3 years ago
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆24Dec 6, 2018Updated 7 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆243Aug 11, 2021Updated 5 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,497Updated this week
- Tools to process and analyze deep sequencing data.☆772Updated this week
- Generate unique KMERs for every contig in a FASTA file☆49Aug 17, 2022Updated 4 years ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Apr 11, 2019Updated 7 years ago
- Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data☆580Oct 26, 2026Updated last week
- ☆12May 11, 2016Updated 10 years ago
- ☆13May 2, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 5 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆549Oct 4, 2026Updated 3 weeks ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- IRIS3: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (https://bmbl.bmi.osumc.edu/iris3/)☆13Aug 26, 2026Updated 2 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆179Aug 22, 2024Updated 2 years ago
- ☆78Mar 6, 2014Updated 12 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,565Jun 1, 2025Updated last year