DOH-JDJ0303 / bigbacter-nf
☆18Updated last week
Related projects ⓘ
Alternatives and complementary repositories for bigbacter-nf
- UPHL's Reference Free Pipeline☆25Updated this week
- Influenza data pipeline to automate genotyping assignment☆21Updated 2 weeks ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- emm Automatic Isolate Labeller☆10Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆15Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆37Updated 2 months ago
- Code Safety Inspection Service☆20Updated 2 years ago
- Plasmid exploration of bacterial genomes☆17Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆25Updated 2 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆26Updated last year
- Basic workflow for nanopore sequencing data☆14Updated this week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆29Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 6 months ago
- in silico typing of the H. influenzae cap locus☆11Updated 3 months ago
- Bacterial GWAS analysis☆32Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 4 months ago
- Recombination-free trees☆56Updated last year
- Archived - please see updated sccmec tool at link below☆13Updated 2 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆25Updated last month
- Harmonization of AMR predictor tool outputs☆21Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆24Updated 7 months ago
- Order and orientation of complete bacterial genomes☆27Updated 10 months ago
- Predict plasmids from uncorrected long read data☆39Updated 4 years ago
- Intra-species bacterial contamination detection☆22Updated last year
- ☆44Updated this week
- Extract subsets of ONT (Nanopore) reads based on time☆20Updated 2 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago