geraldinepascal / FROGS
FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
☆24Updated 3 months ago
Related projects: ⓘ
- Implementation of Krona to QIIME2☆14Updated 6 months ago
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Convert QIIME files into Oligotyping subsets.☆14Updated 9 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆17Updated last week
- Strain Resolution ON Graphs☆45Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 5 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 5 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆19Updated 3 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆33Updated last month
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated this week
- Ley Lab MetaGenome Profiler DataBase generator☆45Updated last year
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Rank-based Gene Ontology analysis of gene expression data☆38Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- ☆23Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆26Updated 6 years ago
- MAG Circularization Method☆31Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆29Updated 3 years ago