czmilanna / nanoformsView external linksLinks
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
☆11Feb 22, 2023Updated 2 years ago
Alternatives and similar repositories for nanoforms
Users that are interested in nanoforms are comparing it to the libraries listed below
Sorting:
- 2025 RAD microbes boot camp☆14Apr 30, 2025Updated 9 months ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Jan 26, 2026Updated 2 weeks ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- Assembly of Nanopore Sequencing☆17Jan 8, 2026Updated last month
- ☆11Jul 3, 2022Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 3 months ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Feb 2, 2026Updated last week
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated last month
- Assemble bacterial isolate genomes from Nanopore reads☆127Jan 22, 2025Updated last year
- ☆33Jul 14, 2021Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Sep 20, 2023Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated 10 months ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Dec 20, 2024Updated last year
- ☆13May 27, 2025Updated 8 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- ☆16Jun 21, 2023Updated 2 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆12Oct 9, 2025Updated 4 months ago
- ☆38Dec 6, 2023Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆40Dec 10, 2025Updated 2 months ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated 9 months ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated last month
- ☆11Nov 17, 2020Updated 5 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated last month
- Predict plasmids from uncorrected long read data☆41Oct 31, 2025Updated 3 months ago
- Multiplexed Shotgun Genotyping☆11Feb 15, 2022Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Feb 5, 2026Updated last week
- ☆50Jan 24, 2026Updated 3 weeks ago
- scripts for microbiome analysis☆11Jul 25, 2024Updated last year
- react native library for converting images to rgb array buffers☆11Feb 19, 2024Updated last year
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 2 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- ☆12Mar 8, 2024Updated last year
- A project to facilitate construction of high-performance simulations of graph-structured systems.☆10Updated this week
- ☆11Mar 10, 2024Updated last year
- ☆10Nov 24, 2025Updated 2 months ago