Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
☆29Aug 3, 2026Updated 3 months ago
Alternatives and similar repositories for pocp
Users that are interested in pocp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 11 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 9 months ago
- ☆31Aug 2, 2026Updated 3 months ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago
- LinearDisplay.pl is a program that generates publication quality linear maps of user-defined genetic features (e.g., ORFs, promoters, tra…☆10Apr 2, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 5 months ago
- Genome browser for thousands of representative bacteria and archaea☆12Sep 8, 2026Updated last month
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆75Oct 27, 2026Updated last week
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 11 months ago
- MetaCHIP2☆11May 5, 2026Updated 6 months ago
- Kraken extension to identify viral contigs☆10Dec 4, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- Scripts for calculating features and regression of prokaryote OGT☆27Feb 13, 2024Updated 2 years ago
- Estimating maximum growth rates of bacteria from genomic data with Phydon.☆10Sep 18, 2025Updated last year
- Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscriptomics☆30Oct 26, 2026Updated last week
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year
- Microbial RNA annotation☆321Apr 12, 2026Updated 6 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 11 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Oct 29, 2026Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆38Jul 21, 2025Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Oct 22, 2026Updated 2 weeks ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A toolkit for prokaryotic comparative genomics☆53Feb 23, 2026Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆44Oct 19, 2026Updated 2 weeks ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 6 months ago
- Build a partitioned pangenome graph from microbial genomes☆312Updated this week
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆271Oct 14, 2026Updated 3 weeks ago
- Phage virion protein classifier☆14Nov 6, 2024Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆80Updated this week