hoelzer / pocpView external linksLinks
Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
☆28Apr 28, 2025Updated 9 months ago
Alternatives and similar repositories for pocp
Users that are interested in pocp are comparing it to the libraries listed below
Sorting:
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 2 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Feb 5, 2026Updated last week
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 3 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 2 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Dec 17, 2025Updated last month
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 2 years ago
- Rebuild of AskOmics☆14Aug 12, 2025Updated 6 months ago
- A Swiss-Army-Knife for Bioinformaticians☆14Jan 27, 2026Updated 2 weeks ago
- repository-based plasmid design☆31Nov 28, 2022Updated 3 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 5 months ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆18Dec 12, 2025Updated 2 months ago
- ☆13Jan 12, 2026Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Jan 8, 2026Updated last month
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 2 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Feb 2, 2021Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Jun 13, 2023Updated 2 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆248Mar 20, 2025Updated 10 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆18Apr 3, 2022Updated 3 years ago
- An Ansible role for installing and configuring CernVM-FS (CVMFS)☆14Feb 3, 2026Updated last week
- ☆11Mar 5, 2025Updated 11 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆64Updated this week
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆21Aug 15, 2025Updated 6 months ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 3 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Sep 17, 2025Updated 4 months ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 3 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 9 months ago