Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
☆29Aug 3, 2026Updated 2 months ago
Alternatives and similar repositories for pocp
Users that are interested in pocp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 8 months ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 10 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆70Sep 14, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 2 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆42Oct 28, 2025Updated 11 months ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆18Apr 3, 2022Updated 4 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- Convert bioinformatics files to an emoji format.☆24Jul 15, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A toolbox for comparative genomics.☆110May 26, 2021Updated 5 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Aug 6, 2026Updated 2 months ago
- Unsupervised Deep Gene Finding☆37Updated this week
- Microbial RNA annotation☆316Apr 12, 2026Updated 6 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated 2 years ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 4 years ago
- ☆18Jan 12, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 4 years ago
- ☆19Feb 5, 2026Updated 8 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆267Updated this week
- Rebuild of AskOmics☆14Updated this week
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 2 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast and haplotype-aware assembler☆16Oct 2, 2026Updated 2 weeks ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 5 years ago
- ☆24Oct 11, 2024Updated 2 years ago
- Scripts and libraries for Environmental Genomics☆37Jul 13, 2026Updated 3 months ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 5 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated 3 weeks ago