Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:
☆21Nov 7, 2018Updated 7 years ago
Alternatives and similar repositories for pATLAS
Users that are interested in pATLAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Oct 27, 2021Updated 4 years ago
- Plasmid exploration of bacterial genomes☆27Mar 2, 2022Updated 4 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Streamlining phylogenomic data gathering, processing and visualization☆88Sep 26, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆251Aug 10, 2025Updated last year
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 6 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Sep 4, 2026Updated 2 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology.☆10Oct 2, 2025Updated 11 months ago
- ☆16May 21, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Sep 9, 2026Updated last week
- A message queue for genomic surveillance☆19Oct 14, 2021Updated 4 years ago
- 💧Bionode-Watermill: A (Not Yet Streaming) Workflow Engine☆37May 18, 2026Updated 4 months ago
- BSR-Based Allele Calling Algorithm☆151Updated this week
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- ☆11Sep 16, 2020Updated 6 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆34Jun 17, 2024Updated 2 years ago
- Long read metagenomics practical at EBAME18☆18Oct 3, 2018Updated 7 years ago
- Long-read mock community experiments☆103Oct 8, 2021Updated 4 years ago
- Tools for developing and running pipelines with the Genomics API☆24Jan 16, 2020Updated 6 years ago
- Code for doing MIC predictions on genomes☆42Dec 5, 2019Updated 6 years ago
- Comprehensive resistance detection from WGS data☆21Sep 4, 2026Updated 2 weeks ago
- SRA python tools☆11Jun 9, 2021Updated 5 years ago
- Python library and Command Line Interface for interacting with Lifebit Applications☆48Updated this week
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated this week
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆50Apr 20, 2023Updated 3 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- A fast approximate aligner for long DNA sequences☆291Oct 11, 2024Updated last year
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago