emmanuelparadis / pegasLinks
Population and Evolutionary Genetics Analysis System
☆29Updated 2 months ago
Alternatives and similar repositories for pegas
Users that are interested in pegas are comparing it to the libraries listed below
Sorting:
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Updated 5 months ago
- Population genetic simulations in R☆63Updated 2 weeks ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Updated last month
- initial commit☆26Updated 3 years ago
- A primer for computational tools to analyze genetics of populations in R☆90Updated 5 years ago
- the hierfstat package☆25Updated last year
- diversity estimation under ecological networks☆83Updated 6 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 5 months ago
- R We There Yet?☆32Updated 10 months ago
- Reconstruction of transmission trees using genomic data☆72Updated 2 years ago
- functions to analyse sanger sequencing reads in R☆104Updated 2 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 5 months ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆31Updated 11 months ago
- method for modeling continuous and discrete population genetic structure☆38Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last month
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆44Updated 3 months ago
- Using genome-wide markers for polyploid breeding☆12Updated last month
- ☆57Updated 3 years ago
- Tools for visualising microbial community amplicon data☆71Updated 3 months ago
- Analysis of Phylogenetics and Evolution☆73Updated last week
- Shiny apps for teaching Population Genetics☆67Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆28Updated 5 months ago
- ☆95Updated 8 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 6 months ago
- Pdfs of slides from 2018 popgen course☆36Updated 7 years ago
- Species richness with high diversity☆68Updated 6 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Miscellaneous functions for metagenomic analysis.☆53Updated last month
- Process MS results in R, in a tidy way☆16Updated 7 years ago