Alternatives and similar repositories for pegas

Users that are interested in pegas are comparing it to the libraries listed below

• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 3 months ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated 2 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆59Updated 8 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆41Updated 9 months ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 7 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆94Updated last year
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆19Updated 4 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆46Updated 9 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 4 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 4 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• nstenz / TICR
  ☆26Updated 4 years ago
• Yale-EEB723 / syllabus
  ☆22Updated 6 years ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 3 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 11 months ago
• EricArcher / strataG
  strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
  ☆26Updated last week
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated last week
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 2 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆86Updated 4 years ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated last year
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆76Updated 3 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated last year
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆16Updated 7 months ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆59Updated last week
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year