Alternatives and similar repositories for pegas

Users that are interested in pegas are comparing it to the libraries listed below

• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆60Updated last month
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆95Updated last year
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 9 months ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 5 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated this week
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated 2 years ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆60Updated 2 weeks ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆19Updated 4 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated last week
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆84Updated last month
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆88Updated 4 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• uqrmaie1 / admixtools
  ☆83Updated 2 months ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 5 months ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated last month
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆43Updated 4 months ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆31Updated 5 months ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆105Updated last year
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆71Updated 2 months ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆33Updated 6 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆16Updated 3 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• cooplab / Popgen_teaching_code
  ☆52Updated 3 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated 3 weeks ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated last month