Phylogenetic analysis in R
☆215Jun 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for phangorn
Users that are interested in phangorn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualization and annotation of phylogenetic trees☆927Apr 29, 2026Updated last month
- ☆232Updated this week
- phylogenetic networks using ggplot2 and ggtree☆12Jun 11, 2026Updated last week
- Base Classes and Functions for Phylogenetic Tree Input and Output☆104Apr 30, 2026Updated last month
- adegenet: a R package for the multivariate analysis of genetic markers☆201Feb 7, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- babette is an R package to work with BEAST2☆46Mar 13, 2026Updated 3 months ago
- Analysis of Phylogenetics and Evolution☆74Jun 2, 2026Updated 2 weeks ago
- microbiome R package☆318May 12, 2026Updated last month
- Phylocom R interface☆15Apr 21, 2023Updated 3 years ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆144Apr 10, 2026Updated 2 months ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆98Jun 4, 2026Updated 2 weeks ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- A grammar of graphics for comparative genomics☆767Feb 23, 2026Updated 3 months ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Accurate sample inference from amplicon data with single nucleotide resolution☆552Feb 13, 2026Updated 4 months ago
- Grid and ggplot2 based visualization for biological data☆116Apr 26, 2026Updated last month
- Large-scale taxonomic harmonization of plant names by fuzzy matching and synonymy resolution against the Leipzig Plant List as taxonomic …☆14Nov 7, 2022Updated 3 years ago
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 7 months ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆36Nov 9, 2023Updated 2 years ago
- Population and Evolutionary Genetics Analysis System☆29Apr 4, 2026Updated 2 months ago
- talk with NCBI entrez using R☆218Dec 14, 2025Updated 6 months ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆86Jun 5, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 7 years ago
- An R package for downstream data analysis of microbiome omics data☆280Updated this week
- Scalable relaxed clock phylogenetic dating☆27Sep 3, 2025Updated 9 months ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 6 years ago
- ☆11May 10, 2025Updated last year
- ☆20Jun 15, 2024Updated 2 years ago
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 5 months ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 2 years ago
- A book for teaching people how to do comparative methods in R☆22Jul 28, 2023Updated 2 years ago
- Ridgeline plots in ggplot2☆424Apr 13, 2026Updated 2 months ago
- Computing resources for peace of mind☆13Feb 23, 2023Updated 3 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆155Dec 31, 2025Updated 5 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 3 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago