Alternatives and similar repositories for phangorn:

Users that are interested in phangorn are comparing it to the libraries listed below

• thibautjombart / adegenet
  adegenet: a R package for the multivariate analysis of genetic markers
  ☆182Updated last month
• ropensci / biomartr
  Genomic Data Retrieval with R
  ☆218Updated last month
• liamrevell / phytools
  ☆220Updated 3 weeks ago
• microbiome / microbiome
  microbiome R package
  ☆291Updated 3 months ago
• raivokolde / pheatmap
  Pretty heatmaps
  ☆247Updated last year
• YuLab-SMU / treeio
  Base Classes and Functions for Phylogenetic Tree Input and Output
  ☆101Updated 4 months ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated 6 months ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆163Updated last week
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆143Updated 3 months ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆71Updated last month
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆176Updated 3 weeks ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆90Updated 4 months ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆140Updated last month
• mhahsler / rBLAST
  Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
  ☆106Updated 2 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆87Updated 4 years ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆120Updated 2 months ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆167Updated 3 months ago
• egeulgen / pathfindR
  pathfindR: Enrichment Analysis Utilizing Active Subnetworks
  ☆186Updated 2 weeks ago
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆170Updated last month
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆64Updated last month
• PhanstielLab / plotgardener
  ☆309Updated 8 months ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆103Updated 2 weeks ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆255Updated last month
• knausb / vcfR
  Tools to work with variant call format files
  ☆256Updated 2 weeks ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆147Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• mixOmicsTeam / mixOmics
  Development repository for the Bioconductor package 'mixOmics '
  ☆179Updated last week
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆111Updated last year
• YuLab-SMU / treedata-book
  a complete reference book for treeio, tidytree and ggtree packages
  ☆104Updated 2 years ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆190Updated last year