Alternatives and similar repositories for phangorn

Users that are interested in phangorn are comparing it to the libraries listed below

• liamrevell / phytools
  ☆227Updated last month
• thibautjombart / adegenet
  adegenet: a R package for the multivariate analysis of genetic markers
  ☆198Updated 11 months ago
• mhahsler / rBLAST
  Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
  ☆112Updated 3 months ago
• YuLab-SMU / treeio
  Base Classes and Functions for Phylogenetic Tree Input and Output
  ☆103Updated 2 months ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆144Updated 10 months ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated last month
• ropensci / biomartr
  Genomic Data Retrieval with R
  ☆222Updated last month
• YuLab-SMU / treedata-book
  a complete reference book for treeio, tidytree and ggtree packages
  ☆104Updated 3 years ago
• zdk123 / SpiecEasi
  Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
  ☆222Updated 2 months ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆73Updated 7 months ago
• raivokolde / pheatmap
  Pretty heatmaps
  ☆268Updated 7 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆89Updated 4 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆95Updated 2 months ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆77Updated last month
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆80Updated 2 years ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆172Updated 2 weeks ago
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆150Updated last month
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆173Updated last year
• microbiome / microbiome
  microbiome R package
  ☆308Updated 4 months ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆192Updated 10 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆126Updated 4 months ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 5 months ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆34Updated 6 years ago
• CerrenRichards / ggplot2-for-publications
  This tutorial runs through the basics of ggplot2 and how to make a figure ready for publication.
  ☆56Updated 5 years ago
• cmerkes / qPCR_LOD_Calc
  LoD calculator
  ☆23Updated 6 years ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆115Updated 3 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 weeks ago
• sprouffske / growthcurver
  Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…
  ☆48Updated 4 years ago
• ropensci / rentrez
  talk with NCBI entrez using R
  ☆213Updated 3 weeks ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆51Updated last week