prog4biol / pfb2023
Programming for Biology @ CSHL 2023
☆14Updated 3 months ago
Alternatives and similar repositories for pfb2023:
Users that are interested in pfb2023 are comparing it to the libraries listed below
- Quantification of transposable element expression using RNA-seq☆64Updated 11 months ago
- Publication quality NGS track plotting☆109Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- HiC uniform processing pipeline☆57Updated last year
- My youtube programming scripts☆47Updated this week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆139Updated this week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆81Updated 4 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- coding exercise using TCGA immune infiltration data☆43Updated 11 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆106Updated this week
- An easy-to-use Hi-C data processing software supporting distributed computation.☆55Updated 5 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Notes on ChIP-seq and other-seq-related tools☆22Updated last week
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆59Updated last year
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆49Updated 3 weeks ago
- ☆51Updated 6 years ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆20Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆42Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 8 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆27Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆67Updated 6 months ago
- Tutorial Website☆55Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆44Updated this week
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 2 years ago
- Collection of analysis tools for quantitative trait loci☆48Updated last week
- ☆45Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year