Alternatives and similar repositories for AAAGs_2018:

Users that are interested in AAAGs_2018 are comparing it to the libraries listed below

• nt246 / lcwgs-guide-tutorial
  ☆80Updated 3 years ago
• GenomicsCoreLeuven / GBSX
  GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
  ☆18Updated 8 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆49Updated 6 months ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆93Updated 2 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆52Updated this week
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 3 months ago
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆87Updated last year
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆65Updated 6 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆118Updated last week
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆51Updated this week
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆62Updated last year
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆46Updated 2 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 6 years ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 3 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆65Updated 4 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆86Updated last year
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆69Updated 2 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆43Updated 5 months ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
  ☆95Updated last week
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆64Updated last year
• chenlianfu / geta
  ☆73Updated 6 months ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated last year
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago