An even better Python program to query .fasta files against the COI database of www.boldsystems.org
☆11Oct 28, 2024Updated last year
Alternatives and similar repositories for BOLDigger2
Users that are interested in BOLDigger2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package supporting interactive data access on BOLD☆21Oct 1, 2025Updated 5 months ago
- Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data☆19Jan 27, 2026Updated last month
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- KiCad files for the Katana60 revision 2 PCB☆10Apr 19, 2020Updated 5 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 6 months ago
- LoD calculator☆24Jul 11, 2019Updated 6 years ago
- Final Version of the AI Tutorial App☆12May 25, 2024Updated last year
- ☆17Nov 18, 2025Updated 4 months ago
- Interface to the Bold Systems barcode webservice☆21Jan 6, 2025Updated last year
- A better git CLI experience☆14Aug 24, 2023Updated 2 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 8 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Distance denoise by Entropy☆15Oct 17, 2025Updated 5 months ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆17May 26, 2025Updated 10 months ago
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 4 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Nov 17, 2025Updated 4 months ago
- MS2Tox is a machine learning tool for predicting ecotoxicity of unidentified chemicals in water by nontarget LC/HRMS☆16Jan 8, 2026Updated 2 months ago
- Benchmarking sync/async FastAPI operations in different contexts☆16Dec 9, 2021Updated 4 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BEAST+BEAGLE compiled with NVIDIA CUDA☆12Jul 19, 2024Updated last year
- The set of NGS processing pipelines used at Babraham☆17Feb 11, 2026Updated last month
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- Requests-HTML(with microsoft/playwright-python): HTML Parsing for Humans™☆34Jan 22, 2025Updated last year
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆20Jan 8, 2024Updated 2 years ago
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆26Mar 8, 2026Updated 2 weeks ago
- A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python…☆16Apr 17, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Zero dependency profanity detector.☆31Jul 12, 2023Updated 2 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- maps identifiers and names to other identifiers and names☆22Feb 20, 2026Updated last month
- QIIME 2 plugin wrapping DADA2☆22Jan 27, 2026Updated last month
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated 2 months ago