kaanb93 / q2-krona
Implementation of Krona to QIIME2
☆14Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for q2-krona
- Strain Resolution ON Graphs☆46Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆29Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 weeks ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated last week
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆34Updated last week
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 6 months ago
- Find Unique genomic Regions☆29Updated this week
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆25Updated 2 weeks ago
- A snakemake workflow for metagenomic projects☆14Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- ☆23Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆24Updated 3 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 7 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Working with the outputs of sourmash in R☆25Updated last year
- Generate unique KMERs for every contig in a FASTA file☆43Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- ☆20Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago