Variant catalogue pipeline
☆26Jan 30, 2026Updated 2 months ago
Alternatives and similar repositories for Variant_catalogue_pipeline
Users that are interested in Variant_catalogue_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆11Nov 7, 2024Updated last year
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Apr 1, 2026Updated 2 weeks ago
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆12Mar 4, 2026Updated last month
- structural variant database software☆48Feb 16, 2026Updated last month
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 30, 2026Updated 2 weeks ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- Tests Allelic Expression data for extreme imbalance w.r.t. population☆11Oct 8, 2021Updated 4 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Oct 11, 2024Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆34Apr 7, 2026Updated last week
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆11Mar 11, 2024Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 months ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- TIDDIT - structural variant calling☆78Mar 22, 2026Updated 3 weeks ago
- Workflow Execution Service Backend☆21Apr 8, 2026Updated last week
- Somatic workflow for Kids-First☆15Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- ☆12May 6, 2021Updated 4 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Mar 31, 2026Updated 2 weeks ago
- A bioinformatics pipeline to phase and impute genetic data☆30Apr 6, 2026Updated last week
- A standalone and free application to explore genetics variations from VCF file☆108Mar 31, 2026Updated 2 weeks ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated 9 months ago
- using all the bits for echt rapid variant annotation and filtering☆156Feb 18, 2026Updated last month
- SV genotyper for long reads with a variation graph☆16Aug 11, 2025Updated 8 months ago
- Nextflow pipeline to process long read ONT and/or pacbio HiFi data☆18Mar 31, 2026Updated 2 weeks ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 9 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago