wassermanlab / Variant_catalogue_pipeline
Variant catalogue pipeline
☆25Updated 3 weeks ago
Alternatives and similar repositories for Variant_catalogue_pipeline:
Users that are interested in Variant_catalogue_pipeline are comparing it to the libraries listed below
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago
- visual analysis of your VCF files☆31Updated 2 years ago
- Variant Interpretation Pipeline☆23Updated last week
- Master of Pores 2☆23Updated 2 months ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 weeks ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 5 months ago
- gatk4 RNA variant calling pipeline☆41Updated 3 weeks ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- An insertion caller for Illumina paired-end WGS data.☆23Updated 6 months ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆12Updated last week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆23Updated last year
- ☆23Updated 2 months ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆44Updated 4 months ago
- python plotly Circos from VCF☆31Updated 8 months ago
- Deep learning-based structural variant filtering method☆38Updated last year
- ☆21Updated 2 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆31Updated last year
- A nextflow variant benchmarking pipeline - premature☆14Updated this week
- ☆39Updated 5 months ago
- Complex structural variant visualization for HiFi sequencing data☆27Updated 3 months ago
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆22Updated 3 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆46Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Fast sequencing data quality metrics☆20Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 7 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago