wassermanlab / Variant_catalogue_pipelineLinks
Variant catalogue pipeline
☆26Updated 5 months ago
Alternatives and similar repositories for Variant_catalogue_pipeline
Users that are interested in Variant_catalogue_pipeline are comparing it to the libraries listed below
Sorting:
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 7 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Updated 3 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- Deep learning-based structural variant filtering method☆39Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Fast sequencing data quality metrics☆28Updated 3 weeks ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Master of Pores 2☆23Updated 10 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 7 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- ☆23Updated 9 months ago
- Location of public benchmarking; primarily final results☆18Updated 7 months ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆35Updated 3 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆38Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year