seqscope / STtools
☆10Updated 2 years ago
Alternatives and similar repositories for STtools:
Users that are interested in STtools are comparing it to the libraries listed below
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated last week
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆61Updated this week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆103Updated 2 months ago
- ☆46Updated this week
- ☆16Updated this week
- Join subcellular Visium HD bins into cells☆92Updated 4 months ago
- ☆33Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆41Updated this week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆68Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- ☆32Updated 8 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- BANKSY: spatial clustering☆103Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Latent Embedding Multivariate Regression☆87Updated 4 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆115Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated 11 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- An R package for handling and analysing imaging mass cytometry data☆26Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated this week
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆79Updated last month
- R package for pathway analysis in scRNA-seq data☆72Updated 8 months ago
- R package for semi-supervised single-cell data integration☆81Updated 3 weeks ago
- ☆30Updated 4 months ago
- An R package for performing cell typing in SMI and other single cell data☆34Updated 4 months ago