lucidrains / enformer-tensorflow-sonnet-training-scriptLinks
The full training script for Enformer - Tensorflow Sonnet
☆18Updated 3 years ago
Alternatives and similar repositories for enformer-tensorflow-sonnet-training-script
Users that are interested in enformer-tensorflow-sonnet-training-script are comparing it to the libraries listed below
Sorting:
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Machine learning methods for DNA sequence analysis.☆54Updated 3 weeks ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 2 months ago
- Jax code for functional genomics ML☆14Updated 6 months ago
- Interpretable splicing model☆20Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated this week
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆89Updated 3 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆23Updated 3 months ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆16Updated 6 months ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆18Updated last year
- Annotated sequence data☆11Updated 7 months ago
- ☆24Updated last year
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆66Updated last year
- Downloader for ENCODE☆32Updated 4 years ago
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆84Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated last year
- Diverse sampling for single-cell datasets☆16Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆18Updated last month
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 4 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆48Updated 3 weeks ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 5 months ago