Alternatives and similar repositories for ehrapy

Users that are interested in ehrapy are comparing it to the libraries listed below

• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆63Updated last month
• broadinstitute / ml4h
  ☆137Updated this week
• BrunakSanderLabs / CancerRiskNet
  ☆69Updated last year
• vanderschaarlab / autoprognosis
  A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.
  ☆151Updated 3 months ago
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆66Updated 2 months ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆145Updated last week
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆178Updated last month
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆142Updated last year
• RuishanLiu / TrialPathfinder
  ☆64Updated 3 years ago
• mims-harvard / ClinVec
  ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine
  ☆61Updated 3 weeks ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• USM-CHU-FGuyon / BlendedICU
  OMOP standardization pipeline for ICU databases
  ☆43Updated 4 months ago
• ipolharvard / ethos-paper
  ☆72Updated 4 months ago
• deepmedicine / BEHRT
  Code for BEHRT: Transformer for Electronic Health Records
  ☆111Updated 2 years ago
• AmsterdamUMC / AmsterdamUMCdb
  AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916
  ☆184Updated 6 months ago
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆51Updated 2 years ago
• nyuolab / NYUTron
  public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
  ☆113Updated last year
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆110Updated 2 years ago
• ratschlab / HIRID-ICU-Benchmark
  Repository for the HiRID ICU Benchmark (HiB) project
  ☆57Updated 2 years ago
• lrsoenksen / HAIM
  This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…
  ☆127Updated 2 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆38Updated last month
• MadhumitaSushil / OncLLMExtraction
  Expert-Curated Oncology Reports to Advance Language Model Inference
  ☆29Updated last year
• alistairewj / mimic-iv-aline-study
  Replication of the arterial line study in MIMIC-IV
  ☆73Updated 3 years ago
• Dana-Farber-AIOS / GPT4DFCI
  A private and secure generative AI tool, based on GPT and o models, deployed for non-clinical use at Dana-Farber Cancer Institute
  ☆62Updated 5 months ago
• I2C9W / fromtexttotables
  Leveraging
  ☆13Updated last year
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆61Updated 2 weeks ago
• landiisotta / convae_architecture
  ☆40Updated 3 years ago
• RyanWangZf / SurvTRACE
  SurvTRACE: Transformers for Survival Analysis with Competing Events
  ☆54Updated last year
• luyang-ai4med / POPDx
  Python implementation of POPDx - Predictions for unseen, rare, and common labels.
  ☆10Updated last year
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 8 months ago