theislab / ehrapyLinks
Electronic Health Record Analysis with Python.
☆298Updated this week
Alternatives and similar repositories for ehrapy
Users that are interested in ehrapy are comparing it to the libraries listed below
Sorting:
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last month
- ☆138Updated this week
- ☆69Updated last year
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆152Updated 4 months ago
- source codes based on PyTorch to analyze EHR☆143Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆180Updated 2 months ago
- ☆64Updated 3 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- OMOP standardization pipeline for ICU databases☆43Updated 5 months ago
- Leveraging☆13Updated last year
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆63Updated last month
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆184Updated 6 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- Replication of the arterial line study in MIMIC-IV☆73Updated 3 years ago
- ☆41Updated 3 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆153Updated 2 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆68Updated 2 months ago
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆55Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- ☆84Updated last year
- MASI Lab Implementation of PheWAS in Python☆28Updated 8 months ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆51Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 4 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆57Updated 2 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆113Updated 2 years ago
- ☆73Updated 4 months ago
- Deep survival analysis made easy☆149Updated 2 weeks ago
- Tofu is a Python tool for generating synthetic UK Biobank data.☆62Updated 2 years ago
- ☆22Updated 4 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆38Updated last week