theislab / ehrapyLinks
Electronic Health Record Analysis with Python.
☆312Updated last week
Alternatives and similar repositories for ehrapy
Users that are interested in ehrapy are comparing it to the libraries listed below
Sorting:
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆65Updated 5 months ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆165Updated 7 months ago
- ☆154Updated this week
- ☆69Updated last year
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆60Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆200Updated 5 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆189Updated 2 weeks ago
- OMOP standardization pipeline for ICU databases☆44Updated 8 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆86Updated 2 weeks ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆157Updated last week
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- A toolkit for evaluating and monitoring AI models in clinical settings☆87Updated this week
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆118Updated 2 years ago
- ☆79Updated 8 months ago
- Deep survival analysis made easy☆164Updated this week
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆86Updated this week
- Leveraging☆12Updated last year
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆11Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆137Updated 2 months ago
- MASI Lab Implementation of PheWAS in Python☆28Updated last year
- Repository for the HiRID ICU Benchmark (HiB) project☆59Updated 2 years ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆72Updated 3 months ago
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆67Updated last year
- General tutorials for the setup and use of MedCAT.☆40Updated 5 months ago
- ☆41Updated 3 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆307Updated last year
- ☆24Updated 5 years ago