theislab / ehrapyLinks
Electronic Health Record Analysis with Python.
☆330Updated this week
Alternatives and similar repositories for ehrapy
Users that are interested in ehrapy are comparing it to the libraries listed below
Sorting:
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆72Updated 7 months ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆172Updated 10 months ago
- ☆167Updated this week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆98Updated 3 months ago
- ☆70Updated last year
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆64Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆149Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆209Updated 8 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆197Updated 3 weeks ago
- OMOP standardization pipeline for ICU databases☆45Updated 11 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆123Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Updated 3 weeks ago
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆11Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆120Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- ☆83Updated 11 months ago
- Replication of the arterial line study in MIMIC-IV☆75Updated 4 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆140Updated 5 months ago
- ☆40Updated 3 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated last year
- Deep survival analysis made easy☆178Updated 2 weeks ago
- General tutorials for the setup and use of MedCAT.☆42Updated 8 months ago
- Repository for the HiRID ICU Benchmark (HiB) project☆59Updated 2 years ago
- ☆24Updated 5 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆89Updated this week
- circEWS public code☆76Updated last year
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆77Updated 2 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 7 months ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆293Updated 4 years ago