Electronic Health Record Analysis with Python.
☆350May 21, 2026Updated this week
Alternatives and similar repositories for ehrapy
Users that are interested in ehrapy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell perturbation analysis☆314Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Flow & mass cytometry analytics.☆60May 11, 2026Updated last week
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Python client for the OmniPath web service☆61Feb 19, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Build contrasts for models defined with formulaic☆12Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆289May 14, 2026Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆83Feb 17, 2025Updated last year
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Registry for scverse ecosystem packages☆37Updated this week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Apr 20, 2026Updated last month
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆61Updated this week
- ☆30Jun 8, 2025Updated 11 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆370May 16, 2026Updated last week
- Multimodal Data (.h5mu) implementation for Python☆121Updated this week
- Python package to calculate comorbidity scores including Charlson Comorbidity Score and Elixhauser Score and their weighted variants.☆20May 9, 2026Updated 2 weeks ago
- Notebooks used in scvi-tools tutorials☆64Updated this week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- Benchmarking analysis of data integration tools☆415Apr 27, 2026Updated 3 weeks ago
- Python package to perform enrichment analysis from omics data.☆268Updated this week
- Annotated data.☆741Updated this week
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆218Jun 6, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python API and Jupyter widget for Vitessce☆66Updated this week
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 5 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆75Jun 17, 2025Updated 11 months ago
- An open and interoperable data framework for spatial omics data☆370May 15, 2026Updated last week
- Multi-omic single-cell optimal transport tools☆207Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆49Nov 8, 2025Updated 6 months ago
- Cookiecutter template for scverse☆89Updated this week
- Backend library for conversational AI in biomedicine☆208Apr 15, 2026Updated last month
- Deep probabilistic analysis of single-cell and spatial omics data☆1,629Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated 9 months ago
- https://www.sc-best-practices.org☆1,194Updated this week
- ☆92Mar 8, 2025Updated last year
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- Gene group activity utility functions for Scanpy☆103Dec 21, 2024Updated last year
- ☆40Feb 24, 2026Updated 3 months ago
- Tutorial repository for the official MOTOR release☆16Feb 22, 2025Updated last year