VectorInstitute / cyclops
A toolkit for evaluating and monitoring AI models in clinical settings
☆83Updated last week
Alternatives and similar repositories for cyclops:
Users that are interested in cyclops are comparing it to the libraries listed below
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆137Updated last week
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆162Updated 2 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆59Updated last year
- Electronic Health Record Analysis with Python.☆283Updated last week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆51Updated last week
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- LLM Embeddings for ICD 10 Data☆47Updated 4 months ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆38Updated 3 months ago
- ☆196Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- The missing middleware layer in healthcare AI 💫 🏥☆34Updated last week
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- A private and secure generative AI tool, based on GPT-4 and deployed for non-clinical use at Dana-Farber Cancer Institute☆60Updated 2 months ago
- TemporAI: ML-centric Toolkit for Medical Time Series☆114Updated last year
- A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.☆84Updated 10 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated this week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- ☆101Updated last week
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆142Updated 3 weeks ago
- ☆23Updated this week
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆113Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆79Updated 2 years ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆31Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated last week
- A version of MIMIC-IV in FHIR☆42Updated 5 months ago
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆49Updated last year
- This repository was used to develop Mirai, the risk model described in: Towards Robust Mammography-Based Models for Breast Cancer Risk.☆131Updated 4 months ago
- General tutorials for the setup and use of MedCAT.☆37Updated 3 months ago