sunlabuiuc / PyHealthLinks
A Deep Learning Python Toolkit for Healthcare Applications.
☆1,243Updated this week
Alternatives and similar repositories for PyHealth
Users that are interested in PyHealth are comparing it to the libraries listed below
Sorting:
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III☆449Updated last year
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.☆424Updated 2 years ago
- Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.☆853Updated 2 years ago
- A customizable pipeline for data extraction from MIMIC-IV.☆260Updated last month
- Code and website related to the eICU Collaborative Research Database☆357Updated 9 months ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆427Updated 2 years ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆286Updated 4 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆304Updated last year
- source codes based on PyTorch to analyze EHR☆147Updated last year
- ☆225Updated 4 years ago
- Evaluation of the Sepsis-3 guidelines in MIMIC-III☆197Updated 3 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 3 months ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆84Updated 2 years ago
- repository for Publicly Available Clinical BERT Embeddings☆734Updated 5 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- A curated list of ML|NLP resources for healthcare.☆472Updated 2 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆185Updated 8 months ago
- Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"☆269Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆133Updated 3 weeks ago
- For local installation of MIMIC IV on a Windows machine, on Postgresql 13 and using PGAdmin☆12Updated 4 years ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆75Updated 3 weeks ago
- Precision Medicine Knowledge Graph (PrimeKG)☆621Updated last year
- OMOP standardization pipeline for ICU databases☆44Updated 7 months ago
- Medical Concept Annotation Tool☆511Updated 2 months ago
- ☆76Updated 6 months ago
- ☆478Updated 3 months ago
- MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases☆2,989Updated 2 months ago
- ☆130Updated last year
- Replication of the arterial line study in MIMIC-IV☆73Updated 3 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆191Updated 3 months ago