A Deep Learning Python Toolkit for Healthcare Applications.
β1,659Sep 16, 2026Updated this week
Alternatives and similar repositories for PyHealth
Users that are interested in PyHealth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python suite to construct benchmark machine learning datasets from the MIMIC-III π clinical database.β891Apr 16, 2023Updated 3 years ago
- MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-IIIβ490Jul 18, 2024Updated 2 years ago
- MIMIC Code Repository: Code shared by the research community for the MIMIC family of databasesβ3,377Sep 1, 2026Updated 2 weeks ago
- A curated list of ML|NLP resources for healthcare.β490Mar 26, 2023Updated 3 years ago
- source codes based on PyTorch to analyze EHRβ150Jan 22, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Source code for StageNet: Stage-Aware Neural Networks for Health Risk Predictionβ33May 7, 2025Updated last year
- Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.β430Oct 7, 2022Updated 3 years ago
- A customizable pipeline for multimodal data extraction from MIMIC-IV!β356Jul 6, 2026Updated 2 months ago
- Medical Concept Annotation Toolβ531Jul 25, 2025Updated last year
- GAMENet : Graph Augmented MEmory Networks for Recommending Medication Combinationβ152Nov 11, 2018Updated 7 years ago
- β234Sep 1, 2021Updated 5 years ago
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β100Mar 19, 2026Updated 6 months ago
- π§ͺYet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom dataseβ¦β106Sep 1, 2026Updated 2 weeks ago
- β15Dec 18, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ134Jun 12, 2026Updated 3 months ago
- [ICLR'24] Enhancing Healthcare Predictions with Personalized Knowledge Graphsβ212Feb 18, 2025Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health recordβ¦β181Aug 31, 2026Updated 2 weeks ago
- β14Aug 9, 2024Updated 2 years ago
- Source code for a comprehensive analysis of MTL over EHR timeseries data.β37Apr 11, 2023Updated 3 years ago
- The official implementation of our paper "MoleRec: Combinatorial Drug Recommendation with Substructure-Aware Molecular Representation Leaβ¦β69Jun 8, 2023Updated 3 years ago
- RETAIN: Interpretable Predictive Model in Healthcare using Reverse Time Attention Mechanismβ227Nov 4, 2017Updated 8 years ago
- circEWS public codeβ79Oct 30, 2024Updated last year
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-codeβ305Jun 17, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python tools for healthcare machine learningβ331Apr 16, 2019Updated 7 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)β234Jun 6, 2025Updated last year
- [WWW 2022] "Conditional Generation Net for Medication Recommendation"β42Jul 21, 2022Updated 4 years ago
- β39Feb 14, 2020Updated 6 years ago
- Code and website related to the eICU Collaborative Research Databaseβ404Dec 19, 2024Updated last year
- Electronic Health Record Analysis with Python.β361Updated this week
- General Healthcare Predictive Frameworkβ24Dec 6, 2025Updated 9 months ago
- [arXiv'24] The official implementation code of LEADER.β44Aug 31, 2024Updated 2 years ago
- β43May 22, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- TemporAI: ML-centric Toolkit for Medical Time Seriesβ130Dec 14, 2023Updated 2 years ago
- [ACL 2024] This is the code for our paper βRAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Recordsβ.β42Sep 19, 2024Updated 2 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)β451Oct 17, 2022Updated 3 years ago
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Recordsβ61Jul 17, 2026Updated 2 months ago
- MetaPred: Meta-Learning for Clinical Risk Prediction with Limited Patient Electronic Health Records (KDD 2019)β49Mar 29, 2020Updated 6 years ago
- β12Apr 3, 2022Updated 4 years ago
- Python package for machine learning for healthcare using a OMOP common data modelβ111Jun 17, 2023Updated 3 years ago