hoon9405 / GenHPFLinks
General Healthcare Predictive Framework
☆23Updated 2 months ago
Alternatives and similar repositories for GenHPF
Users that are interested in GenHPF are comparing it to the libraries listed below
Sorting:
- A collection of ETLs from common data formats to Medical Event Data Standard☆39Updated 6 months ago
- A simple set of MEDS polars-based ETL and transformation functions☆40Updated 2 months ago
- ☆14Updated last year
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆36Updated 2 months ago
- ☆83Updated 11 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆115Updated 7 months ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆40Updated 4 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆98Updated 3 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Updated 3 weeks ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 6 months ago
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆56Updated 5 months ago
- REMed: Retrieval-Enhanced Medical prediction model☆23Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆209Updated 8 months ago
- Training HuggingFace models on EHR data☆40Updated 3 months ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆89Updated 3 years ago
- [NeurIPS 2024 D&B] Official code for "EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries"☆40Updated last year
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated 2 months ago
- A high-performance database and Python reader interface for MEDS datasets☆20Updated 2 weeks ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆91Updated 2 months ago
- The code for the paper "MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement"☆23Updated last year
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆113Updated last year
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Updated 2 years ago
- ☆31Updated 3 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆140Updated 5 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 7 months ago
- ☆39Updated 2 years ago
- ☆27Updated 8 months ago
- ☆38Updated 4 months ago
- Code repository for the paper : Causal thinking for decision making on Electronic Health Records: why and how☆22Updated 2 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆120Updated 2 years ago