Medical-Event-Data-Standard / meds
Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
☆47Updated this week
Alternatives and similar repositories for meds:
Users that are interested in meds are comparing it to the libraries listed below
- A collection of ETLs from common data formats to Medical Event Data Standard☆27Updated last week
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆30Updated 2 weeks ago
- A simple set of MEDS polars-based ETL and transformation functions☆28Updated last week
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆22Updated this week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆130Updated 2 weeks ago
- ☆20Updated last week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last week
- ☆65Updated last week
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 9 months ago
- ☆17Updated 3 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆159Updated last month
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆64Updated 3 weeks ago
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆14Updated last month
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆55Updated last year
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆111Updated 6 months ago
- OMOP standardization pipeline for ICU databases☆39Updated 3 weeks ago
- General Healthcare Predictive Framework☆15Updated this week
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated last month
- Python package for machine learning for healthcare using a OMOP common data model☆107Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆115Updated last year
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆14Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆77Updated 2 years ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- ☆29Updated 2 years ago
- A customizable pipeline for data extraction from MIMIC-IV.☆209Updated last year
- Repository for the HiRID ICU Benchmark (HiB) project☆52Updated last year
- Source code for a comprehensive analysis of MTL over EHR timeseries data.☆37Updated last year