CogStack / Foresight
Deep Generative Modelling of Patient Timelines using Electronic Health Records
☆55Updated last year
Alternatives and similar repositories for Foresight:
Users that are interested in Foresight are comparing it to the libraries listed below
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last week
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆110Updated last year
- General tutorials for the setup and use of MedCAT.☆37Updated 2 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated 11 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆47Updated this week
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆43Updated last year
- source codes based on PyTorch to analyze EHR☆134Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 9 months ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- ☆65Updated last week
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆34Updated last month
- A collection of ETLs from common data formats to Medical Event Data Standard☆27Updated last week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆130Updated 2 weeks ago
- A simple set of MEDS polars-based ETL and transformation functions☆28Updated last week
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆159Updated last month
- Sample end-to-end pipeline over MIMIC-IV demonstrating the Event Stream GPT code base.☆14Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆30Updated 2 weeks ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆115Updated last year
- ☆29Updated 2 years ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆22Updated this week
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆77Updated 2 years ago
- Code repository to create the MIMIC-CDM Dataset.☆27Updated last month
- ☆33Updated last year
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆31Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆64Updated 3 weeks ago
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆30Updated 11 months ago
- ☆38Updated 3 years ago