CogStack / ForesightLinks
Deep Generative Modelling of Patient Timelines using Electronic Health Records
☆66Updated 5 months ago
Alternatives and similar repositories for Foresight
Users that are interested in Foresight are comparing it to the libraries listed below
Sorting:
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆119Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆42Updated 2 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆118Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆202Updated 6 months ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆90Updated last month
- Expert-Curated Oncology Reports to Advance Language Model Inference☆30Updated last year
- source codes based on PyTorch to analyze EHR☆147Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆159Updated this week
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 5 months ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆72Updated 3 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- General tutorials for the setup and use of MedCAT.☆40Updated 6 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆308Updated last year
- Electronic Health Record Analysis with Python.☆319Updated this week
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆87Updated 3 weeks ago
- Training HuggingFace models on EHR data☆34Updated last month
- ☆31Updated 3 years ago
- ☆80Updated 8 months ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆140Updated 3 months ago
- all scripts used in gatortron project☆128Updated 2 years ago
- A toolkit for evaluating and monitoring AI models in clinical settings☆87Updated this week
- A collection of ETLs from common data formats to Medical Event Data Standard☆37Updated 4 months ago
- ☆45Updated 2 years ago
- Clinical text summarization by adapting large language models☆150Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆87Updated 3 years ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆99Updated 6 months ago
- Leveraging☆12Updated last year