VectorInstitute / odysseyLinks
A toolkit for developing foundation models using Electronic Health Record (EHR) data.
☆46Updated this week
Alternatives and similar repositories for odyssey
Users that are interested in odyssey are comparing it to the libraries listed below
Sorting:
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆116Updated 5 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆42Updated 2 months ago
- Training HuggingFace models on EHR data☆34Updated last month
- ☆45Updated 2 years ago
- PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development☆117Updated last year
- ☆80Updated 8 months ago
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆53Updated 2 months ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆159Updated this week
- Code repository to create the MIMIC-CDM Dataset.☆40Updated 9 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆119Updated 2 years ago
- ☆31Updated 3 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆66Updated 5 months ago
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆28Updated this week
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆87Updated 3 years ago
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆76Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆85Updated 2 weeks ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆36Updated 3 years ago
- TemporAI: ML-centric Toolkit for Medical Time Series☆125Updated last year
- Limited automatic tabular ML pipelines for generic MEDS datasets.☆18Updated 3 months ago
- A collection of resources and information for concrete skills that are helpful when pursuing a PhD in computer science (specifically in M…☆22Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆202Updated 6 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆118Updated 2 years ago
- Code for "DuETT: Dual Event Time Transformer for Electronic Health Records"☆23Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records☆24Updated last year
- General Healthcare Predictive Framework☆22Updated this week
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆33Updated 2 weeks ago
- ☆38Updated 2 years ago
- The code for the paper "MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement"☆23Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆38Updated 2 months ago