som-shahlab / ehrshot-benchmarkLinks
A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
☆195Updated 4 months ago
Alternatives and similar repositories for ehrshot-benchmark
Users that are interested in ehrshot-benchmark are comparing it to the libraries listed below
Sorting:
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆155Updated this week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆81Updated 2 months ago
- ☆77Updated 7 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆64Updated 3 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆35Updated 2 months ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆97Updated 4 months ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆108Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆117Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆306Updated last year
- Training HuggingFace models on EHR data☆30Updated 2 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆47Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 3 months ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆36Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆115Updated 3 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆39Updated last week
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆44Updated last month
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆134Updated last month
- Clinical text summarization by adapting large language models☆149Updated last year
- A simple set of MEDS polars-based ETL and transformation functions☆35Updated 3 months ago
- all scripts used in gatortron project☆124Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆37Updated last week
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆29Updated last week
- A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks☆161Updated 8 months ago
- ☆43Updated last year
- ☆30Updated last week
- [npj Digital Medicine 2025] Multiple Embedding Model for EHR (MEME) used for strong prediction on Emergency Department tasks☆16Updated 3 months ago
- MedAgentBench: A Realistic Virtual EHR Environment to Benchmark Medical LLM Agents☆143Updated 2 weeks ago
- ☆89Updated last year