som-shahlab / ehrshot-benchmarkLinks
A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
☆190Updated 3 months ago
Alternatives and similar repositories for ehrshot-benchmark
Users that are interested in ehrshot-benchmark are comparing it to the libraries listed below
Sorting:
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆155Updated this week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆75Updated last month
- ☆76Updated 6 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 3 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆33Updated last month
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆107Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆116Updated 2 years ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆97Updated 4 months ago
- Med-BERT, contextualized embedding model for structured EHR data☆301Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 2 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆38Updated last week
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆47Updated last year
- Training HuggingFace models on EHR data☆29Updated last month
- Code for BEHRT: Transformer for Electronic Health Records☆114Updated 2 years ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆115Updated 2 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆130Updated 3 weeks ago
- A simple set of MEDS polars-based ETL and transformation functions☆33Updated 2 months ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆84Updated 2 years ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆29Updated 3 months ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆36Updated 3 months ago
- all scripts used in gatortron project☆122Updated last year
- ☆89Updated last year
- A customizable pipeline for data extraction from MIMIC-IV.☆260Updated last month
- source codes based on PyTorch to analyze EHR☆147Updated last year
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆42Updated last week
- A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks☆159Updated 8 months ago
- Clinical text summarization by adapting large language models☆149Updated last year
- ☆32Updated 2 years ago
- [npj Digital Medicine 2025] Multiple Embedding Model for EHR (MEME) used for strong prediction on Emergency Department tasks☆16Updated 2 months ago