som-shahlab / ehrshot-benchmark
A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
☆162Updated 2 months ago
Alternatives and similar repositories for ehrshot-benchmark:
Users that are interested in ehrshot-benchmark are comparing it to the libraries listed below
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆137Updated 2 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆50Updated this week
- ☆65Updated last month
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated last week
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆105Updated 7 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆112Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated last year
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆58Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last year
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆36Updated this week
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆117Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆281Updated last year
- Taking off-the-shelf HuggingFace models and training them on EHR data☆20Updated last month
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆31Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆44Updated last year
- ☆80Updated 7 months ago
- A customizable pipeline for data extraction from MIMIC-IV.☆215Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆32Updated 3 weeks ago
- source codes based on PyTorch to analyze EHR☆135Updated last year
- Clinical text summarization by adapting large language models☆140Updated 8 months ago
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆26Updated this week
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆66Updated last week
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆173Updated 3 months ago
- all scripts used in gatortron project☆116Updated last year
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated 2 weeks ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆111Updated 3 weeks ago
- A simple set of MEDS polars-based ETL and transformation functions☆29Updated this week
- A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks☆147Updated 3 months ago