som-shahlab / ehrshot-benchmarkLinks
A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
☆185Updated 2 months ago
Alternatives and similar repositories for ehrshot-benchmark
Users that are interested in ehrshot-benchmark are comparing it to the libraries listed below
Sorting:
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆155Updated 2 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆72Updated 3 weeks ago
- ☆74Updated 5 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated 2 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆33Updated 3 weeks ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆115Updated 2 years ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆107Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆296Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆47Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆112Updated 2 years ago
- Training HuggingFace models on EHR data☆28Updated last month
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆95Updated 3 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 2 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆37Updated 3 weeks ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆36Updated last year
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆128Updated 2 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- A simple set of MEDS polars-based ETL and transformation functions☆33Updated last month
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆41Updated last month
- The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health☆28Updated 3 months ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆35Updated 2 months ago
- all scripts used in gatortron project☆122Updated last year
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆114Updated last month
- Clinical text summarization by adapting large language models☆149Updated last year
- A customizable pipeline for data extraction from MIMIC-IV.☆254Updated 3 weeks ago
- source codes based on PyTorch to analyze EHR☆145Updated last year
- A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks☆158Updated 7 months ago
- ☆32Updated 2 years ago
- ☆42Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago