Medical Concept Annotation Tool
☆531Jul 25, 2025Updated last year
Alternatives and similar repositories for MedCAT
Users that are interested in MedCAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Sep 4, 2025Updated last year
- General tutorials for the setup and use of MedCAT.☆41May 22, 2025Updated last year
- Running MedCAT as a RESTful web service☆22Jun 23, 2025Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆346Nov 9, 2021Updated 4 years ago
- Building data processing pipelines for documents processing with NLP using Apache NiFi and related services☆61Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- System for Medical Concept Extraction and Linking☆455Aug 12, 2024Updated 2 years ago
- Basic setup and easy to follow templates to interact and search CogStack for data analysts☆12Sep 18, 2025Updated last year
- Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recogn…☆13Jan 20, 2023Updated 3 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆77Jun 17, 2025Updated last year
- Library for clinical NLP with spaCy.☆684Jun 4, 2026Updated 4 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Jan 13, 2023Updated 3 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆48Jan 13, 2023Updated 3 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆56Mar 20, 2024Updated 2 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,997Dec 4, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆227Dec 11, 2024Updated last year
- Medical Text Mining and Information Extraction with spaCy☆442Nov 1, 2022Updated 3 years ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Oct 4, 2019Updated 7 years ago
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆14Jan 10, 2021Updated 5 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆100Mar 19, 2026Updated 7 months ago
- Medical Similarity Dataset creation from SNOMED☆29Jul 14, 2022Updated 4 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 3 years ago
- A collection of papers on automated medical coding from free-texts☆154Dec 21, 2024Updated last year
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆75Mar 12, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CogStack NLP, including the Medical Concept Annotation Tool MedCAT☆86Updated this week
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Creates a concept graph from a SNOMED CT release☆15Nov 27, 2025Updated 11 months ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Mar 29, 2022Updated 4 years ago
- Scalable SNOMED CT Terminology Server using Elasticsearch☆397Oct 20, 2026Updated last week
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Mar 6, 2025Updated last year
- High-performance tool for negation and uncertainty detection in radiology reports☆169Jul 16, 2023Updated 3 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆614Aug 15, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆600Mar 25, 2023Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆236Apr 28, 2023Updated 3 years ago
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆275Oct 22, 2026Updated last week
- spaCy pipeline object for negating concepts in text☆279Apr 20, 2026Updated 6 months ago
- Mapping the MIMIC-III database to the OMOP schema☆148Mar 17, 2024Updated 2 years ago
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆21Feb 27, 2019Updated 7 years ago
- A deep learning toolkit for healthcare AI: EHR (MIMIC, eICU, OMOP), clinical text, signals and imaging. 30+ models, reproducible pipeline…☆1,688Updated this week