Alternatives and similar repositories for MedCAT

Users that are interested in MedCAT are comparing it to the libraries listed below

• medspacy / medspacy
  Library for clinical NLP with spaCy.
  ☆607Updated 2 months ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆419Updated last year
• kormilitzin / med7
  ☆220Updated 10 months ago
• kexinhuang12345 / clinicalBERT
  ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
  ☆427Updated 3 years ago
• ncbi-nlp / bluebert
  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
  ☆581Updated 2 years ago
• EmilyAlsentzer / clinicalBERT
  repository for Publicly Available Clinical BERT Embeddings
  ☆735Updated 5 years ago
• ZhiGroup / Med-BERT
  Med-BERT, contextualized embedding model for structured EHR data
  ☆307Updated last year
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆154Updated 2 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆336Updated 3 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆40Updated 5 months ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆70Updated last month
• ncbi-nlp / BioSentVec
  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
  ☆602Updated 2 years ago
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated last month
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆124Updated last year
• gmichalo / UmlsBERT
  ☆100Updated 3 years ago
• suamin / ICD-BERT
  ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)
  ☆77Updated 2 years ago
• bigscience-workshop / biomedical
  Tools for curating biomedical training data for large-scale language modeling
  ☆484Updated 10 months ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• NLPatVCU / medaCy
  Medical Text Mining and Information Extraction with spaCy
  ☆439Updated 2 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• McGill-NLP / medal
  Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…
  ☆279Updated 2 years ago
• acadTags / Awesome-medical-coding-NLP
  A collection of papers on automated medical coding from free-texts
  ☆148Updated 10 months ago
• MiuLab / PLM-ICD
  PLM-ICD: Automatic ICD Coding with Pretrained Language Models
  ☆73Updated last year
• uf-hobi-informatics-lab / SDoH_SODA
  ☆18Updated last year
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• dreji18 / Bio-Epidemiology-NER
  Recognize bio-medical entities from a text corpus
  ☆128Updated 2 years ago
• lisavirginia / clinical-abbreviations
  ☆66Updated 4 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆70Updated 5 months ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆173Updated 5 years ago
• facebookresearch / Clinical-Trial-Parser
  Library for converting clinical trial eligibility criteria to a machine-readable format.
  ☆176Updated 3 years ago