Medical Concept Annotation Tool
☆522Jul 25, 2025Updated 7 months ago
Alternatives and similar repositories for MedCAT
Users that are interested in MedCAT are comparing it to the libraries listed below
Sorting:
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Sep 4, 2025Updated 5 months ago
- General tutorials for the setup and use of MedCAT.☆42May 22, 2025Updated 9 months ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Nov 9, 2021Updated 4 years ago
- Running MedCAT as a RESTful web service☆22Jun 23, 2025Updated 8 months ago
- Building data processing pipelines for documents processing with NLP using Apache NiFi and related services☆56Updated this week
- System for Medical Concept Extraction and Linking☆432Aug 12, 2024Updated last year
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Jan 13, 2023Updated 3 years ago
- Library for clinical NLP with spaCy.☆634Aug 4, 2025Updated 6 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆72Jun 17, 2025Updated 8 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆49Mar 20, 2024Updated last year
- ☆221Dec 11, 2024Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Jun 25, 2025Updated 8 months ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- Medical Text Mining and Information Extraction with spaCy☆438Nov 1, 2022Updated 3 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,925Dec 4, 2025Updated 2 months ago
- Medical Similarity Dataset creation from SNOMED☆28Jul 14, 2022Updated 3 years ago
- A collection of papers on automated medical coding from free-texts☆153Dec 21, 2024Updated last year
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 5 months ago
- Mapping the MIMIC-III database to the OMOP schema☆144Mar 17, 2024Updated last year
- Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recogn…☆11Jan 20, 2023Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 2 years ago
- Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning☆48Jan 13, 2023Updated 3 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆250Aug 24, 2020Updated 5 years ago
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆14Jan 10, 2021Updated 5 years ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Oct 4, 2019Updated 6 years ago
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆259Feb 20, 2026Updated last week
- New approach to use Snomed-CT Concept using Word Embedding with Word2vec☆21Feb 27, 2019Updated 7 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Mar 29, 2022Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Mar 12, 2023Updated 2 years ago
- Semantic query and text mining tool☆21Oct 31, 2023Updated 2 years ago
- spaCy pipeline object for negating concepts in text☆282Jun 16, 2025Updated 8 months ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 2 years ago
- Scalable SNOMED CT Terminology Server using Elasticsearch☆328Feb 5, 2026Updated 3 weeks ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆57Feb 21, 2026Updated last week
- ☆38Mar 27, 2022Updated 3 years ago
- A Deep Learning Python Toolkit for Healthcare Applications.☆1,449Updated this week
- ☆55Apr 9, 2020Updated 5 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆155Sep 13, 2023Updated 2 years ago