CogStack / MedCATLinks
Medical Concept Annotation Tool
☆522Updated 6 months ago
Alternatives and similar repositories for MedCAT
Users that are interested in MedCAT are comparing it to the libraries listed below
Sorting:
- System for Medical Concept Extraction and Linking☆431Updated last year
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆434Updated 3 years ago
- ☆221Updated last year
- Library for clinical NLP with spaCy.☆631Updated 6 months ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆313Updated last year
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Updated 2 years ago
- General tutorials for the setup and use of MedCAT.☆41Updated 8 months ago
- A collection of papers on automated medical coding from free-texts☆151Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆155Updated 2 years ago
- repository for Publicly Available Clinical BERT Embeddings☆751Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Updated 4 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 5 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆75Updated 3 weeks ago
- all scripts used in gatortron project☆130Updated 2 years ago
- Tools for curating biomedical training data for large-scale language modeling☆489Updated last year
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆76Updated 2 years ago
- ☆101Updated 3 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆610Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71Updated 9 months ago
- Recognize bio-medical entities from a text corpus☆131Updated 2 years ago
- Weakly supervised medical named entity classification☆72Updated 3 years ago
- ☆153Updated 2 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆282Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research