tengmx / rnaseqcompLinks
Benchmarks for RNA-seq quantification pipelines
☆8Updated 5 years ago
Alternatives and similar repositories for rnaseqcomp
Users that are interested in rnaseqcomp are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- mitochondrial variant analysis tools☆14Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Allele frequency filter app☆14Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago