tengmx / rnaseqcomp
Benchmarks for RNA-seq quantification pipelines
☆8Updated 4 years ago
Alternatives and similar repositories for rnaseqcomp:
Users that are interested in rnaseqcomp are comparing it to the libraries listed below
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- mitochondrial variant analysis tools☆14Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆23Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- ☆9Updated 8 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- a set of NGS pipelines