ewels / Labrador
A web based tool to manage and automate the processing of publicly available datasets.
☆40Updated 4 years ago
Alternatives and similar repositories for Labrador:
Users that are interested in Labrador are comparing it to the libraries listed below
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last week
- simple library for dealing with SAM cigar strings☆40Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆33Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Updated 2 years ago
- a set of NGS pipelines☆24Updated last week
- Python package and routines for merging VCF files☆29Updated 4 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year