ewels / LabradorLinks
A web based tool to manage and automate the processing of publicly available datasets.
☆39Updated 4 years ago
Alternatives and similar repositories for Labrador
Users that are interested in Labrador are comparing it to the libraries listed below
Sorting:
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 2 months ago