gzhmat / ShinyCNV
a Shiny/R application to view and annotate copy number variations
☆28Updated 2 years ago
Alternatives and similar repositories for ShinyCNV:
Users that are interested in ShinyCNV are comparing it to the libraries listed below
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- DriverPower☆26Updated 2 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Third-generation fusion gene detection☆14Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆21Updated 3 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆51Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 2 weeks ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 3 weeks ago
- a set of NGS pipelines☆24Updated this week
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 9 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Adapters for trimming☆30Updated 6 years ago
- ☆21Updated 10 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- Filter and prioritize fusion calls☆20Updated 6 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Python module and utility programs for working with GFF files☆32Updated 4 years ago