gzhmat / ShinyCNV
a Shiny/R application to view and annotate copy number variations
☆28Updated last year
Alternatives and similar repositories for ShinyCNV:
Users that are interested in ShinyCNV are comparing it to the libraries listed below
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Third-generation fusion gene detection☆14Updated last year
- ☆21Updated last month
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- ☆23Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 7 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 7 months ago
- ☆51Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- DriverPower☆26Updated 3 weeks ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last month
- a set of NGS pipelines☆24Updated 2 weeks ago
- ☆22Updated 6 months ago