gzhmat / ShinyCNVLinks
a Shiny/R application to view and annotate copy number variations
☆28Updated 2 years ago
Alternatives and similar repositories for ShinyCNV
Users that are interested in ShinyCNV are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 9 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- DriverPower☆26Updated 11 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- ☆23Updated last month
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- ☆21Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year