Bioinformatics Open Source Sequence machine
☆32Jun 18, 2026Updated 3 months ago
Alternatives and similar repositories for machineboss
Users that are interested in machineboss are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- ☆21Jul 6, 2023Updated 3 years ago
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆22Oct 1, 2026Updated last week
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆146Aug 24, 2025Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ☆10Jun 9, 2025Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- horizontal pileup☆16Sep 1, 2026Updated last month
- A collection of bioinformatics algorithms☆12Aug 20, 2022Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- GBWT-based handle graph☆36Aug 19, 2026Updated last month
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Visualization methods for omics dataset quality control☆11Jun 24, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 3 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- GNU-Make-like utility for managing builds and complex workflows☆113Nov 14, 2023Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- A python package for optimizing processing pipelines using statistical design of experiments (DoE).☆25Jun 21, 2022Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Dec 24, 2024Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated last month
- ☆12Sep 7, 2019Updated 7 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- Substring index for paths in a graph☆63Sep 30, 2026Updated last week
- En-masse installation of R-packages☆20Apr 25, 2020Updated 6 years ago