Alternatives and similar repositories for machineboss:

Users that are interested in machineboss are comparing it to the libraries listed below

• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• shendurelab / MetaPhase
  The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)
  ☆16Updated 6 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 5 months ago
• nickloman / poredb
  ☆19Updated 8 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 6 years ago
• Maihj / AC-DIAMOND
  AC-DIAMOND is a DNA-protein alignment tool
  ☆16Updated last year
• robsyme / nextflow-annotate
  Workflows I find helpful for fungal genome annotation
  ☆21Updated last year
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆33Updated 4 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated this week
• aziele / alfpy
  http://www.combio.pl/alfree
  ☆23Updated 2 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆20Updated 2 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 8 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• nebiolabs / ampseer
  Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…
  ☆14Updated last year
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆35Updated 3 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• Golob-Minot / geneshot
  ☆28Updated 9 months ago
• pirovc / metameta
  ☆23Updated 5 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 6 months ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 10 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last month
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated 7 months ago