evoldoers / machinebossLinks
Bioinformatics Open Source Sequence machine
☆32Updated 2 years ago
Alternatives and similar repositories for machineboss
Users that are interested in machineboss are comparing it to the libraries listed below
Sorting:
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- k-mer similarity analysis pipeline☆23Updated 3 weeks ago
- reference free variant assembly☆34Updated 2 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- simple and not slow ORF caller☆21Updated last month
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Find Unique genomic Regions☆32Updated last month
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 6 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 8 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- ☆23Updated 6 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Example of SGTK application for E.coli dataset:☆32Updated 5 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Python bindings for the TaxonKit library☆41Updated last week