BioAI-kits / PathGNN
☆12Updated 2 years ago
Alternatives and similar repositories for PathGNN
Users that are interested in PathGNN are comparing it to the libraries listed below
Sorting:
- A VGAE-based model to infer transcription factor regulatory network☆26Updated 2 years ago
- ☆10Updated 6 months ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- ☆17Updated 5 years ago
- Multi-omics integration method using AE and GCN☆34Updated last year
- repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks☆15Updated 3 years ago
- ☆30Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆53Updated 9 months ago
- ☆42Updated last year
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 5 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆13Updated 7 years ago
- ☆44Updated 2 years ago
- Deep-Learning framework for multi-omic and survival data integration☆82Updated last year
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆14Updated 2 years ago
- Pathformer: biological pathway informed transformer model☆28Updated last year
- ☆38Updated 2 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆17Updated 6 months ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆18Updated 4 months ago
- ☆30Updated 2 years ago
- ☆54Updated 2 years ago
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆15Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- ☆17Updated 9 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆61Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago