Alternatives and similar repositories for PathGNN

Users that are interested in PathGNN are comparing it to the libraries listed below

• schulter / EMOGI
  An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.
  ☆160Updated 3 years ago
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆38Updated 2 years ago
• zeochoy / tcga-embedding
  using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
  ☆21Updated 7 years ago
• CMRI-ProCan / DeePathNet
  ☆13Updated 3 weeks ago
• lulab / Pathformer
  Pathformer: biological pathway informed transformer model
  ☆34Updated 2 years ago
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆86Updated 2 years ago
• melobio / Concerto-reproducibility
  ☆40Updated 3 years ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆28Updated 3 years ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆90Updated last year
• cantinilab / momix-notebook
  ☆66Updated 2 years ago
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆55Updated 5 years ago
• HantaoShu / DeepSEM
  ☆87Updated 2 years ago
• itmoon7 / onconpc
  Clinical sequencing-based primary site classifier
  ☆37Updated last year
• fsct135 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 4 years ago
• ttgump / scDeepCluster
  scDeepCluster for Single Cell RNA-seq data
  ☆103Updated last year
• LiuLab-Bioelectronics-Harvard / UnitedNet
  ☆49Updated last year
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆64Updated 2 years ago
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆52Updated 6 years ago
• CNRGH / crimmix
  ☆17Updated 6 years ago
• Machine-Learning-Class / Machine-learning
  欢迎来到机器学习理论与方法课程
  ☆62Updated 4 years ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆33Updated 6 years ago
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆165Updated 4 years ago
• zhuhr213 / HDRNet
  ☆15Updated last year
• xuyu-cam / atlas_genetic_scores_omic_traits
  This repository houses scripts for training genetic scores of omic traits in INTERVAL
  ☆28Updated 2 years ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆58Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆67Updated 5 months ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆106Updated 2 years ago
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆62Updated 2 years ago
• SmritiChawla / Precily
  ☆33Updated 3 years ago