PySCeS / pyscesLinks
The official PySCeS project source code repository.
☆38Updated 3 weeks ago
Alternatives and similar repositories for pysces
Users that are interested in pysces are comparing it to the libraries listed below
Sorting:
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 9 months ago
- Python Environment for Modeling and Simulating Biological Systems☆116Updated 2 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Symbolic Kinetic Models with Python☆32Updated 2 months ago
- Modeling toolkit for biochemical simulation☆74Updated 4 months ago
- Python utilities for SBML☆41Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- libRoadRunner: A high-performance SBML simulator☆49Updated last month
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- Python framework for multi-parameter optimization and evaluation of protein folding models☆16Updated 4 years ago
- CHAP is a tool for the functional annotation of ion channel structures:☆21Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆25Updated last month
- Rule-based modeling framework☆64Updated last week
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆28Updated 2 years ago
- A simplified python interface to COPASI.☆20Updated 3 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆107Updated last week
- The Integrative Modeling Platform☆76Updated this week
- ☆24Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- pyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of str…☆26Updated 4 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 2 weeks ago
- A primer on statistical mechanics for biochemists☆46Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- Standard reaction Gibbs energy estimation for biochemical reactions☆17Updated 6 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆20Updated 6 years ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 3 months ago
- ⚙️🐺 Robotic chemistry made easy☆31Updated 2 years ago