Alternatives and similar repositories for wcEcoli

Users that are interested in wcEcoli are comparing it to the libraries listed below

• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆74Updated last year
• CovertLab / vEcoli
  Whole cell model of E. coli implemented with Vivarium
  ☆29Updated this week
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆30Updated 2 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆64Updated 8 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• SBRG / precise-db
  A high-fidelity E. coli RNA-seq compendium
  ☆33Updated 4 years ago
• SBRG / MASSpy
  ☆26Updated 3 years ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆33Updated 3 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆26Updated last month
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆47Updated last month
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆61Updated 3 weeks ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆41Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆109Updated 5 months ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆34Updated 3 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 8 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆15Updated last week
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆56Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last month
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆130Updated last month
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 9 months ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated last year
• JBEI / jqmm
  JBEI Quantitative Metabolic Modeling library
  ☆13Updated 5 years ago
• vpejaver / mutpred2
  Source code for MutPred2.0
  ☆15Updated 9 months ago