CovertLab / wcEcoli
Whole Cell Model of E. coli
☆19Updated this week
Alternatives and similar repositories for wcEcoli:
Users that are interested in wcEcoli are comparing it to the libraries listed below
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Release of the whole cell E. coli model.☆62Updated last month
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- ☆22Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 2 months ago
- Computation of Microbial Ecosystems in Time and Space☆21Updated this week
- D3.js based visualizations of cobrapy metabolic models☆44Updated 4 years ago
- The BiGG Models website server☆80Updated 5 years ago
- Metabolic Engineering Workbench☆38Updated 7 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆49Updated last month
- Python Environment for Modeling and Simulating Biological Systems☆110Updated 2 months ago
- A simplified python interface to COPASI.☆19Updated last month
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 5 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆26Updated 2 years ago
- Standard reaction Gibbs energy estimation for biochemical reactions☆17Updated 6 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Julia interface to ViennaRNA for RNA structure prediction and analysis☆22Updated 9 months ago
- awesome tools for RNA☆15Updated 2 years ago
- Constraint-Based Reconstruction and EXascale Analysis☆43Updated 3 months ago
- JBEI Quantitative Metabolic Modeling library☆12Updated 4 years ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆55Updated last year
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- Repository of tutorials for The COBRA Toolbox☆18Updated 2 months ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆20Updated 5 years ago
- Native python implementation of SBOL 3.0 specification☆37Updated 9 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆54Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆99Updated last week