Whole Cell Model of E. coli
☆44Oct 9, 2026Updated this week
Alternatives and similar repositories for wcEcoli
Users that are interested in wcEcoli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole cell model of E. coli implemented with Vivarium☆34Updated this week
- Release of the whole cell E. coli model.☆80Dec 10, 2024Updated last year
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆16May 13, 2026Updated 5 months ago
- Mother machine image analysis through napari☆11Jun 6, 2026Updated 4 months ago
- Run MPC-based policies and train RL agents in gym-anm environments using implementations from Stable Baselines 3.☆13Mar 2, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fix BibTeX databases with Crossref metadata☆11Nov 24, 2018Updated 7 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Sep 1, 2026Updated last month
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- ☆11Feb 11, 2023Updated 3 years ago
- ☆28Mar 31, 2023Updated 3 years ago
- Calculation of the Ripley K (spatial statistics) value in python☆13Sep 29, 2025Updated last year
- Mandelbrot viewer using WebAssembly☆11Nov 19, 2024Updated last year
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19May 24, 2024Updated 2 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆18Sep 11, 2013Updated 13 years ago
- ☆28Apr 9, 2025Updated last year
- Rapid Annotation Transfer Tool☆10May 21, 2025Updated last year
- Phylogenetic trees in Julia☆21Sep 29, 2026Updated 2 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆130Updated this week
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆11Aug 29, 2020Updated 6 years ago
- ☆13Jul 16, 2022Updated 4 years ago
- ☆19Nov 7, 2025Updated 11 months ago
- The gro bacterial micro-colony growth specification and simulation software. For more information see the gro website, listed below.☆53May 18, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)☆16Updated this week
- This Python tool uses PimEyes for reverse image searches, returning links to pages where matches are found, useful for investigations and…☆13Sep 12, 2024Updated 2 years ago
- ☆77Sep 30, 2026Updated last week
- Algorithms to compute DNA complexity☆35May 24, 2022Updated 4 years ago
- ☆14Jan 27, 2024Updated 2 years ago
- Deep learning pipeline for segmentation of fluorescent labels in microscopy images☆14Nov 10, 2021Updated 4 years ago
- A dark green-yellow DuoTone syntax theme☆14May 29, 2017Updated 9 years ago
- Transcriptome State Perturbation Generator☆13Dec 3, 2021Updated 4 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Say goodbye to the hassle of tax season with TaxGPT, the GPT-4-Vision powered AI tax assistant that helps you navigate the complex world …☆10Jun 2, 2023Updated 3 years ago
- ☆19Jan 13, 2023Updated 3 years ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆205Jul 4, 2023Updated 3 years ago
- Deep neural networks for predicting CpG methylation☆37Apr 11, 2017Updated 9 years ago
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 8 months ago
- Bioscrape: Biological Modeling, Simulation, and Parameter Estimation☆30Sep 28, 2026Updated 2 weeks ago
- Manifold Learning by Mixture Models of VAEs for Inverse Problems☆19Sep 20, 2024Updated 2 years ago