CovertLab / wcEcoliLinks
Whole Cell Model of E. coli
☆25Updated this week
Alternatives and similar repositories for wcEcoli
Users that are interested in wcEcoli are comparing it to the libraries listed below
Sorting:
- Release of the whole cell E. coli model.☆66Updated 6 months ago
- ☆24Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Computation of Microbial Ecosystems in Time and Space☆24Updated last week
- Whole cell model of E. coli implemented with Vivarium☆20Updated this week
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- The BiGG Models website server☆83Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated last week
- Metabolic Engineering Workbench☆40Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 3 months ago
- Python package for analyzing and visualizing iModulons☆13Updated this week
- ☆22Updated 4 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆26Updated this week
- A collection of M models downloaded from published studies☆16Updated 9 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆61Updated last month
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated last month
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆55Updated 4 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 2 months ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated 2 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆29Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated last month
- Use Thor's Axe to cut exons into their evolutionary building blocks☆12Updated last week
- Template-based RNA secondary structure visualization☆26Updated 7 months ago
- ☆17Updated 4 years ago