Alternatives and similar repositories for GillesPy2

Users that are interested in GillesPy2 are comparing it to the libraries listed below

• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆116Updated last week
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated last week
• DanielSank / vankampen-stochastic
  Exercises and notes for N.G. Van Kampen's Stochastic Processes in Physics and Chemistry
  ☆38Updated 4 months ago
• AMICI-dev / AMICI
  High-performance sensitivity analysis for large ordinary differential equation models
  ☆127Updated this week
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆42Updated 4 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 3 months ago
• ronceray / StochasticForceInference
  Python implementation of Langevin inference methods from time series.
  ☆31Updated 3 weeks ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last week
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆28Updated this week
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last week
• liuyxpp / mpltex
  A python package for producing publication quality images using matplotlib.
  ☆102Updated 5 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 4 months ago
• readdy / readdy
  Python / C++ based particle reaction-diffusion simulator
  ☆61Updated 3 months ago
• AnDiChallenge / andi_datasets
  andi_datasets provides functions to generate, save, load and manipulate datasets of diffusion anomalous trajectories. It is part of the A…
  ☆32Updated last month
• pele-python / pele
  Python energy landscape explorer
  ☆98Updated last week
• mglerner / IntroToBiophysics
  Introduction to Biophysics, requires one semester of calculus-based Physics.
  ☆28Updated last year
• quantumbrake / cayenne
  Python package for stochastic simulations
  ☆18Updated 2 weeks ago
• Emergent-Behaviors-in-Biology / mlreview_notebooks
  Notebooks for "A high bias low-variance introduction to Machine Learning for physicists."
  ☆71Updated 6 years ago
• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆29Updated 6 months ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆188Updated 3 months ago
• whitead / skunk
  Insert SVG images into matplotlib elements. Can be used to also compose matplotlib plots by nesting them.
  ☆86Updated 2 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆262Updated this week
• msmbuilder / msmbuilder
  Statistical models for biomolecular dynamics
  ☆159Updated 4 years ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆52Updated last week
• quantumjot / PyFolding
  Python framework for multi-parameter optimization and evaluation of protein folding models
  ☆17Updated 4 years ago
• bjodah / pyneqsys
  Solve symbolically defined systems of non-linear equations numerically.
  ☆52Updated 2 months ago
• peastman / statmech
  ☆134Updated 7 years ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago