StochSS / GillesPy2Links
Modeling toolkit for biochemical simulation
☆74Updated 5 months ago
Alternatives and similar repositories for GillesPy2
Users that are interested in GillesPy2 are comparing it to the libraries listed below
Sorting:
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated last week
- Exercises and notes for N.G. Van Kampen's Stochastic Processes in Physics and Chemistry☆36Updated 8 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated 3 weeks ago
- Python package for stochastic simulations☆17Updated 2 weeks ago
- High-performance sensitivity analysis for large ordinary differential equation models☆120Updated this week
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆28Updated 2 months ago
- Code for the Manifold Boundary Approximation Method☆14Updated 2 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 3 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆109Updated last week
- Symbolic Kinetic Models with Python☆33Updated 3 weeks ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Automated dynamical systems inference☆38Updated last year
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Python implementation of the force and diffusion inference method described in (Frishman and Ronceray, Phys. Rev. X 10, 021009, 2020).☆28Updated last week
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Updated last year
- Python utilities for SBML☆41Updated 3 weeks ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- libRoadRunner: A high-performance SBML simulator☆50Updated this week
- The official PySCeS project source code repository.☆38Updated last month
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 10 months ago
- Rule-based modeling framework☆64Updated 3 weeks ago
- Python Environment for Modeling and Simulating Biological Systems☆118Updated 2 weeks ago
- A Julia-based framework for molecular modelling☆59Updated last year
- Python implementation of Underdamped Langevin Inference, a method to infer the dynamical equation of underdamped stochastic systems from …☆16Updated last week
- Toolbox for non-linear calibration modeling.☆24Updated 7 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 4 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated 2 years ago
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆16Updated 2 years ago