Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
☆15May 30, 2023Updated 3 years ago
Alternatives and similar repositories for BNGTutorial
Users that are interested in BNGTutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆44Updated this week
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 5 months ago
- A Python Framework for Modeling and Analysis of Signaling Systems☆30Aug 31, 2026Updated 2 weeks ago
- Rule-based modeling framework☆70Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Patient-Specific Modeling in Python☆19Aug 31, 2026Updated 2 weeks ago
- Netflux is a user-friendly software for developing dynamic computational models of biological networks. Models are created in Excel forma…☆35Jan 9, 2025Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices☆26Updated this week
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆64Sep 8, 2026Updated last week
- ☆10Apr 8, 2026Updated 5 months ago
- A tool for semantics-based annotation and composition of biosimulation models☆20Jun 24, 2026Updated 2 months ago
- cy3sbml: SBML for Cytoscape 3☆15Jan 22, 2026Updated 7 months ago
- Official Implementation of "Doubly Mixed-Effects Gaussian Process Regression" (Jun Ho Yoon, Daniel P. Jeong, Seyoung Kim) (AISTATS 2022, …☆12Jul 13, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Build a graph of citations from annotated BibTeX files.☆14Jan 22, 2018Updated 8 years ago
- Particle Swarm Optimization algorithm in Python☆14Apr 23, 2024Updated 2 years ago
- Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.☆16Dec 20, 2022Updated 3 years ago
- Context-Adaptive Inference: A Unified Statistical and Foundation-Model View☆13Jul 25, 2026Updated last month
- Python utilities for SBML☆41Sep 8, 2026Updated last week
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆13May 16, 2023Updated 3 years ago
- Visualize a song's lyrics with a similarity matrix☆25Oct 16, 2017Updated 8 years ago
- An interactive data table for Pluto.jl notebooks.☆10Nov 22, 2020Updated 5 years ago
- Fast vectorized mathematical functions for SIMD.jl , using SLEEFPirates.jl .☆12May 28, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Adding conjecturing to Sage☆14Mar 17, 2023Updated 3 years ago
- PePPer - Personalized Perturbation Profiler☆11Oct 4, 2018Updated 7 years ago
- ☆13Dec 20, 2025Updated 8 months ago
- Smooth parametric bodies in 2D and 3D flows☆12May 11, 2026Updated 4 months ago
- Personalized Regression☆16Dec 29, 2019Updated 6 years ago
- Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.☆15May 4, 2022Updated 4 years ago
- Geometry-preserving Adaptive Mesher☆36Sep 3, 2024Updated 2 years ago
- Texas Hold'em Odds Calculator☆16Jan 26, 2017Updated 9 years ago
- ☆17Sep 6, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Must-read papers on AI for Biology☆28Oct 4, 2023Updated 2 years ago
- Matrix Product State algorithm for computing characters of the symmetric group S_n☆11Sep 26, 2025Updated 11 months ago
- Dose response curves and DIP rates for cell proliferation data in Python☆17Updated this week
- Benchmarking and metadata tracking. CLI and Python integration. Extensible, with distributed/cluster support.☆20Aug 13, 2026Updated last month
- Evolutionary Individual based modelling, mathematically grounded.☆13Mar 25, 2022Updated 4 years ago
- exactly rounded double-precision summation for Julia☆20Jun 29, 2026Updated 2 months ago
- Objects, Invariants and Properties for Graph Theory (GT) automated conjecturing: in particular with the Sage program CONJECTURING: http:/…☆18May 24, 2023Updated 3 years ago