RuleWorld / BNGTutorial
Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
☆15Updated last year
Alternatives and similar repositories for BNGTutorial:
Users that are interested in BNGTutorial are comparing it to the libraries listed below
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Rule-based modeling framework☆62Updated last week
- Python utilities for SBML☆41Updated 2 weeks ago
- libRoadRunner: A high-performance SBML simulator☆48Updated 2 weeks ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- cy3sbml: SBML for Cytoscape 3☆14Updated last month
- The official PySCeS project source code repository.☆38Updated this week
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆24Updated this week
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆26Updated last year
- Modeling toolkit for biochemical simulation☆74Updated 3 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 6 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆25Updated 3 weeks ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 8 months ago
- Python Environment for Modeling and Simulating Biological Systems☆116Updated last month
- Python package for working with PEtab files☆14Updated last week
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆26Updated last year
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 3 weeks ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆10Updated 5 months ago
- Gillespie Stochastic Simulation Algorithm☆14Updated 11 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆106Updated this week
- Release of the whole cell E. coli model.☆65Updated 4 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated 11 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Virtual Cell Framework☆82Updated this week
- A simplified python interface to COPASI.☆20Updated 2 weeks ago
- Symbolic Kinetic Models with Python☆32Updated last month
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 2 months ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago