Virtual Cell Framework
☆139Sep 21, 2026Updated this week
Alternatives and similar repositories for vcell
Users that are interested in vcell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simplified python interface to COPASI.☆28Sep 14, 2026Updated last week
- Investigating the role of pre-training dataset size and diversity on the performance of single-cell foundation models☆21May 12, 2026Updated 4 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆130Updated this week
- Whole cell model of E. coli implemented with Vivarium☆32Updated this week
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rule-based modeling framework☆70Sep 14, 2026Updated last week
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Python Environment for Modeling and Simulating Biological Systems☆146Aug 29, 2026Updated 3 weeks ago
- Agentic design of virtual cell models☆166Sep 7, 2026Updated 2 weeks ago
- Awesome-AI-Virtual-Cell: papers, datasets, benchmarks, talks, and community resources for AIVC☆298Aug 21, 2026Updated last month
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 5 months ago
- A framework for connecting scientific models across languages and scales.☆36Apr 14, 2026Updated 5 months ago
- ☆27Dec 9, 2022Updated 3 years ago
- Python utilities for SBML☆42Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆42Jan 19, 2026Updated 8 months ago
- Arc Virtual Cell Atlas☆601Aug 28, 2026Updated 3 weeks ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- Individual-based Dynamics of Microbial Communities Simulator☆20Aug 4, 2022Updated 4 years ago
- ☆32Jan 22, 2025Updated last year
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated 3 weeks ago
- Registry for scverse ecosystem packages☆39Updated this week
- ☆27May 29, 2026Updated 3 months ago
- ☆22Jan 11, 2026Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Foundation model-driven lab☆35Mar 25, 2026Updated 5 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆700Jul 24, 2026Updated last month
- Core Interface and Engine for Vivarium 1.0☆38Aug 8, 2026Updated last month
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆217Aug 15, 2026Updated last month
- Public repo for rbio, a biologically-informed reasoning model trained on virtual cell models as verifiers☆144Nov 24, 2025Updated 9 months ago
- MiToBo - A microscope image analysis toolbox☆15Oct 14, 2025Updated 11 months ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Updated this week
- Lightweight persistence layer framework, support interface mapping, dynamic sql and sql file manager.☆17Sep 10, 2026Updated last week
- VCWorld: A Biological World Model for Virtual Cell Simulation☆70May 29, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Subsampled Graph-Based DBSCAN☆11Oct 21, 2020Updated 5 years ago
- A modular compiler for biological chemical reaction networks☆54Aug 21, 2026Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆17Apr 29, 2025Updated last year
- ☆45Jul 8, 2025Updated last year
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆15May 12, 2026Updated 4 months ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated 2 years ago