virtualcell / vcellLinks
Virtual Cell Framework
☆95Updated this week
Alternatives and similar repositories for vcell
Users that are interested in vcell are comparing it to the libraries listed below
Sorting:
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆114Updated this week
- Release of the whole cell E. coli model.☆71Updated 10 months ago
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆180Updated 9 months ago
- Python framework for Systems Biology modeling☆188Updated 3 months ago
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 months ago
- iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…☆63Updated last month
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 7 months ago
- Rule-based modeling framework☆65Updated 5 months ago
- The BiGG Models website server☆85Updated 5 years ago
- CompuCell3D public source code repository☆74Updated 2 weeks ago
- The generic genome-scale metabolic model of Homo sapiens☆122Updated last month
- GPU-accelerated multicellular modelling framework☆66Updated 6 months ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Updated last week
- PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…☆34Updated 3 weeks ago
- DCell browser and gene deletion simulator☆123Updated 2 years ago
- Source code for molecular graphics program UCSF ChimeraX☆210Updated this week
- Core Interface and Engine for Vivarium 1.0☆33Updated 10 months ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- libRoadRunner: A high-performance SBML simulator☆53Updated 2 weeks ago
- The ViennaRNA Package☆369Updated 3 months ago
- The Fluorescent Protein Database☆71Updated this week
- A modular compiler for biological chemical reaction networks☆47Updated 2 weeks ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆59Updated last month
- Whole Cell Model of E. coli☆29Updated last week
- A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.☆28Updated 2 years ago
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- File format for 96-well plate layouts.☆23Updated 2 years ago
- ☆25Updated 2 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆28Updated last week
- Symbolic Kinetic Models with Python☆32Updated 4 months ago