virtualcell / vcellLinks
Virtual Cell Framework
☆98Updated this week
Alternatives and similar repositories for vcell
Users that are interested in vcell are comparing it to the libraries listed below
Sorting:
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆115Updated this week
- Release of the whole cell E. coli model.☆72Updated 11 months ago
- Rule-based modeling framework☆65Updated 5 months ago
- Python framework for Systems Biology modeling☆189Updated 4 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 7 months ago
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆181Updated 9 months ago
- Python Environment for Modeling and Simulating Biological Systems☆128Updated 3 weeks ago
- iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…☆62Updated 2 months ago
- Whole Cell Model of E. coli☆33Updated this week
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆28Updated last week
- The generic genome-scale metabolic model of Homo sapiens☆123Updated 2 months ago
- GPU-accelerated multicellular modelling framework☆66Updated 7 months ago
- Cello v2 is the continuation of the Cello genetic circuit design software.☆63Updated 3 years ago
- CompuCell3D public source code repository☆76Updated last week
- ☆25Updated 2 years ago
- SBOL Designer Project☆31Updated 4 years ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Updated last week
- A modular compiler for biological chemical reaction networks☆47Updated last week
- Core Interface and Engine for Vivarium 1.0☆33Updated 11 months ago
- DCell browser and gene deletion simulator☆124Updated 2 years ago
- PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and vis…☆34Updated last week
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- The BiGG Models website server☆85Updated 6 years ago
- Symbolic Kinetic Models with Python☆32Updated 5 months ago
- General low-level API☆50Updated 3 years ago
- Automated machine learning for analyzing, interpreting, and designing biological sequences☆172Updated 2 years ago
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- A Python framework for structural systems biology☆109Updated 4 years ago
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- Gillespie Stochastic Simulation Algorithm☆14Updated 12 years ago