virtualcell / vcell
Virtual Cell Framework
☆77Updated last week
Alternatives and similar repositories for vcell:
Users that are interested in vcell are comparing it to the libraries listed below
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆105Updated this week
- CompuCell3D public source code repository☆65Updated this week
- Rule-based modeling framework☆61Updated 2 weeks ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆41Updated 2 weeks ago
- Release of the whole cell E. coli model.☆64Updated 3 months ago
- Python Environment for Modeling and Simulating Biological Systems☆113Updated this week
- libRoadRunner: A high-performance SBML simulator☆46Updated this week
- ☆22Updated 2 years ago
- iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importin…☆59Updated 4 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- Core Interface and Engine for Vivarium 1.0☆29Updated 4 months ago
- Python framework for Systems Biology modeling☆179Updated 3 weeks ago
- A simplified python interface to COPASI.☆20Updated last month
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆56Updated last year
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 5 months ago
- SBOL Designer Project☆32Updated 3 years ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- The Open Lab Book: A collection of freely distributable scientific protocols☆29Updated 4 years ago
- Gillespie Stochastic Simulation Algorithm☆14Updated 11 years ago
- The Integrative Modeling Platform☆76Updated last week
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆23Updated this week
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆16Updated 4 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Whole Cell Model of E. coli☆21Updated this week
- The BiGG Models website server☆82Updated 5 years ago
- Native python implementation of SBOL 3.0 specification☆38Updated last week
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆176Updated 3 weeks ago
- nucleic acid folding☆91Updated 7 months ago
- The Fluorescent Protein Database